Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61720 404 / 2e-141 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 273 / 3e-89 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 222 / 4e-70 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT4G27250 206 / 8e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G45400 199 / 4e-61 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 187 / 1e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 178 / 3e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 176 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 176 / 3e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 172 / 4e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041031 [exp] 263 / 1e-85 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 215 / 2e-67 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006751 [exp] 213 / 5e-65 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10006141 [exp] 201 / 5e-62 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10014363 [exp] 197 / 1e-60 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 197 / 2e-60 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 194 / 3e-59 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021294 [exp] 192 / 6e-58 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10002300 [exp] 189 / 2e-57 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030700 [exp] 520 / 0 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 511 / 0 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G229500 [exp] 276 / 9e-91 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G033600 [exp] 268 / 1e-87 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G147702 [exp] 245 / 3e-79 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 241 / 1e-77 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 239 / 5e-77 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 237 / 6e-76 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 230 / 2e-73 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 229 / 4e-73 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10020072 pacid=23156218 polypeptide=Lus10020072 locus=Lus10020072.g ID=Lus10020072.BGIv1.0 annot-version=v1.0 ATGGCCACACCTACCACTGTCGTCCAGCCTCCGTCGGGGAAGAAAACTGCATGTGTGATAGGAGGCACCGGGTTCGTGGCGTCTAGGCTGGTCAAGTTAC TCTTGGAAAATGGCTACTCGGTCCGGACCACTGTCCGGAACCCTGACAACCAGAGGAGGATTTCACACCTGATGCCGCTGAAAGAATTGGGGGAGCTGGA GATTTTCGCCGCAGAGTTAACTGACGAGGAGAGTTTCATCGCTCCGGTGGCAGGGTCCGACTTGGTATTCCTCGTCGCAACCCCGGTCAATTTTGCTTCT AAGGATCCTGAGAATGACATGATAAAGCCAGCAATCCAAGGTGTGGAAAACGTGCTGAAAGCTTGCGCCAAGGCCAAAACGGTGAAAAGGGTGGTGCTTA CTTCCTCTGCAGCAGCCGTTACTATTAATAATGTCGAGGGAACAGGTTTGGTCATGGACGAGAATAACTGGACCAATGTTCAGTTTCTAACCTCACACAA GCCTCCAACTTGGGGGTACGCTGTTTCGAAGACACTAGCTGAGAAAGCAGCATGGAAATTTGCTGAAGAAAACAAGATTGATCTTGTGACAGTGATTCCT TCACTTGTAGCTGGTCCTCCTCTCACTGCTGACGTACCTAGCAGCATTAACCTTGCACTCTCCATGCTCACAGGTTCAACCAGCCAGTGTGGGAATGAAA TGCTCATAAATGGGCTGAAAGGAATGGAAAAGCTGTCGGGTTCGATCTCGATTACACACGTTGAGGATGTTTGTAGAGCACATTTGTTCGTTGCGGAGAA GGAATCTGCTTCTGGCAGATTCATATGCTGTGCTGCTAATACTAGTGTCGCTAAGCTAGCCAAATTCTTCAGCTTGAGATATCCACAGTACAAAGTCCAG CCCCAGATTGGAGATGTTCCGGAACACGCGAAGCTGACGATTTCTTCAGAGAAGCTGATCGGAGAAGGATTCAGTTTCAAGCATGGGTTGGAAGAGATTT ATGACGAGACAGTGGAATATTTCAAAGCTGTAGGAAATTTGAAATGA
AA sequence Show only first row Show all	>Lus10020072 pacid=23156218 polypeptide=Lus10020072 locus=Lus10020072.g ID=Lus10020072.BGIv1.0 annot-version=v1.0 MATPTTVVQPPSGKKTACVIGGTGFVASRLVKLLLENGYSVRTTVRNPDNQRRISHLMPLKELGELEIFAAELTDEESFIAPVAGSDLVFLVATPVNFAS KDPENDMIKPAIQGVENVLKACAKAKTVKRVVLTSSAAAVTINNVEGTGLVMDENNWTNVQFLTSHKPPTWGYAVSKTLAEKAAWKFAEENKIDLVTVIP SLVAGPPLTADVPSSINLALSMLTGSTSQCGNEMLINGLKGMEKLSGSISITHVEDVCRAHLFVAEKESASGRFICCAANTSVAKLAKFFSLRYPQYKVQ PQIGDVPEHAKLTISSEKLIGEGFSFKHGLEEIYDETVEYFKAVGNLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10020072 [exp]	0	1
AT4G19510			Disease resistance protein (TI...		Lus10008318 [exp]	16.1	0.6007
					Lus10037769 [exp]	24.6	0.5983
					Lus10022366 [exp]	27.7	0.5795
AT1G16290			unknown protein		Lus10037104 [exp]	29.2	0.5910
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10034220 [exp]	31.4	0.4775
AT4G35160			O-methyltransferase family pro...		Lus10018526 [exp]	36.0	0.5084
					Lus10027601 [exp]	42.1	0.5122
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10022646 [exp]	45.2	0.5025
					Lus10040877 [exp]	55.7	0.4888
					Lus10028008 [exp]	63.9	0.4636

Compare expression of checked genes

Lus10020072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.