Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55890 307 / 1e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 306 / 2e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 274 / 8e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 163 / 7e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 162 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 158 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 144 / 6e-39 PPR336 pentatricopeptide repeat 336 (.1) AT1G02060 118 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 112 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 112 / 1e-26 GUN1 genomes uncoupled 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007619 [exp] 313 / 4e-104 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 307 / 8e-102 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 306 / 3e-101 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018393 [exp] 295 / 3e-97 AT3G13160 290 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 181 / 7e-53 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 181 / 8e-53 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 165 / 4e-46 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 154 / 3e-43 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 137 / 2e-36 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032400 [exp] 345 / 1e-116 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 341 / 4e-115 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 335 / 1e-112 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 320 / 1e-106 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G030000 [exp] 308 / 2e-102 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 176 / 4e-51 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 176 / 5e-51 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 160 / 6e-45 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 149 / 1e-40 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 128 / 5e-33 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020073 pacid=23156119 polypeptide=Lus10020073 locus=Lus10020073.g ID=Lus10020073.BGIv1.0 annot-version=v1.0 ATGAGCAAAATGGCCAAGTCCTCTGTCTACAGCCGCCTCCACGGCGTATTCACCAAAAAAGTGACGGCTCCGACTGTCACTCCCGCCAGCACCACCGCCA CTACTCCCGCCGCCGTCGTGGCTAAAGGCGTGAGCGTAAAGGATCTCTACAAGGCCCGAAGCCTGGAGGGTCTCGTGGCAATGTTCAAGGAGTCCTCTAA AGAAAGTCGCTTCAGAGCCAGGTGGGGAATCTACGAGGAAACAGTCCGGCGTCTGGTGAGAGCCGATCGCCGCCACGGGGTCGAGGAAATCCTGGAGGAG CAAAAGAAGTACCCGGACATTAAAAAGGAAGGTTTCAATGTCCGTCTCATAAGGCTGTATGGTGACGCGGGCATGTTCGAGCACGCACGTAAGCTGTTCG ACGAAATGCCTGAGAGATGCGAAAGGACCGTTTTGTCCTTCAATGCTCTCTTGGCTGCGGCTGTTCATTCGAGGAAGTATGATGTAGCTAATGAGCTGTT TAAGGAACTGCCGGAGGAGTTGGGGATTCGTCCCGATGTGTTCTCTCATAACATTGTTATGAAGGGATTTTGTGAGGTGGGTGAGTTTGATAAAGCTGCT TTAGTGATGGATCAGATGGAGTGCGAGCCTAACTTGGTTACATTCAATACATTGTTACATGGATTTTACTCGAATGGAAGGTTCAAGGAAGGGGACGCTA TTTGGGATCGATTGATGGTGGAGAAGAGCAAGAATAAGAATATCTCTCCAGATGTAAGGAGTTACTGTGCCAAGATCATGGGGCTGGCAATGCAGAAAAG GTCGAAAGAAGCGGTCGAATTGCTGGCTGGGATGGAAGCGGAGGGAGGGATCAAACCCGATGCAATCTGCTGGCACAATATGATTATGGGATACGTGAAG GAGGGGAACATGGAGGAAGCGAAACGTTGGTACGTGGAAATGAAATTACGTGAGTGTAAAGTGCATAGGATGACTTTCTCGATGTTGATACCGTATGCTT GTGAGAATGGCGATGTGGGTTTCAGTGTGGAGCTGGCTAAAGATATTTTCAGCATGAAGCATCTTGTTGAGGTTGGGCTGTTGCAGAGAGTGGTGGATGC ACTTGTGAAGGAGGGTAGGATTGATGAGGCCGAGGTGGTTAGGTCACTTGGGATGAACAATGGTTACTTTCAGTATAAGTTGTGCTTGCCTTCCACTTTG AGCAAAGCCGACTGA
AA sequence Show only first row Show all	>Lus10020073 pacid=23156119 polypeptide=Lus10020073 locus=Lus10020073.g ID=Lus10020073.BGIv1.0 annot-version=v1.0 MSKMAKSSVYSRLHGVFTKKVTAPTVTPASTTATTPAAVVAKGVSVKDLYKARSLEGLVAMFKESSKESRFRARWGIYEETVRRLVRADRRHGVEEILEE QKKYPDIKKEGFNVRLIRLYGDAGMFEHARKLFDEMPERCERTVLSFNALLAAAVHSRKYDVANELFKELPEELGIRPDVFSHNIVMKGFCEVGEFDKAA LVMDQMECEPNLVTFNTLLHGFYSNGRFKEGDAIWDRLMVEKSKNKNISPDVRSYCAKIMGLAMQKRSKEAVELLAGMEAEGGIKPDAICWHNMIMGYVK EGNMEEAKRWYVEMKLRECKVHRMTFSMLIPYACENGDVGFSVELAKDIFSMKHLVEVGLLQRVVDALVKEGRIDEAEVVRSLGMNNGYFQYKLCLPSTL SKAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	0	1
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	1.0	0.9402
AT5G25500			unknown protein		Lus10002031 [exp]	1.4	0.9226
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	2.4	0.9070
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	3.3	0.8712
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	4.2	0.8857
AT1G09680			Pentatricopeptide repeat (PPR)...		Lus10014170 [exp]	5.1	0.8430
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	5.3	0.9050
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	5.3	0.8811
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	5.5	0.8865
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	5.7	0.8737

Compare expression of checked genes

Lus10020073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.