Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61667 163 / 5e-52 Protein of unknown function, DUF538 (.1) AT5G54530 135 / 4e-41 Protein of unknown function, DUF538 (.1) AT3G07470 101 / 1e-27 Protein of unknown function, DUF538 (.1) AT5G16380 100 / 6e-27 Protein of unknown function, DUF538 (.1) AT3G07460 97 / 1e-25 Protein of unknown function, DUF538 (.1.2) AT1G55265 77 / 3e-18 Protein of unknown function, DUF538 (.1) AT5G19860 60 / 2e-11 Protein of unknown function, DUF538 (.1) AT4G02360 54 / 1e-09 Protein of unknown function, DUF538 (.1) AT2G03350 50 / 4e-08 Protein of unknown function, DUF538 (.1) AT4G02370 42 / 5e-05 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006749 [exp] 204 / 2e-68 AT1G61667 171 / 2e-55 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 199 / 4e-66 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 198 / 1e-65 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 107 / 7e-30 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 106 / 6e-29 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 106 / 1e-28 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 103 / 6e-28 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10019216 [exp] 103 / 8e-28 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10004300 [exp] 94 / 1e-24 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032600 [exp] 166 / 3e-53 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 152 / 2e-47 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 149 / 1e-46 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 142 / 8e-44 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 104 / 9e-29 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 102 / 1e-27 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 101 / 3e-27 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 99 / 9e-27 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 96 / 1e-25 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 67 / 3e-14 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10020075 pacid=23156138 polypeptide=Lus10020075 locus=Lus10020075.g ID=Lus10020075.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTACCATCCTCTCCATCTCCCTCCTCCTCATAATCCTCCCCTCTTCCTCCTTCACCACCACCACGTCATCATCCTCGTCCCTACAAAGAC TCCTCCACAGCCAGGGGCTCCCCGGCGGAGTGTTCCCAGACAATGTGAACTCCTTTGACCTCGACCCGACCACCGGGCTTCTGGAGGTCCGGCTGGACGG ACCCTGCTTGGCCAAATTCGAGAACAGGGTATTCTTCGAGAGCGTGGTCCGTGCCAATCTCAGCTTCGGTGGGCTGATGGGGTTGGAGGGTCTGACTCAG GAGGAGCTCTTCCTTTGGTTCCCTGTGAAAGGGCTCTCCGTTAGGGATCCGGATTCCGGTGTCATATTGATGGATATTGGTCTTGCTCGTAAACAGCTCC CCGCTTCTCTGTTTGAAGATCCCCCTTCTTGCGAGGAAGCTCAAGGCGCGTTGATGAAGAAATCAAGAGGGGTGATTGGATTTGGAGCAGAGAGGTGA
AA sequence Show only first row Show all	>Lus10020075 pacid=23156138 polypeptide=Lus10020075 locus=Lus10020075.g ID=Lus10020075.BGIv1.0 annot-version=v1.0 MASITILSISLLLIILPSSSFTTTTSSSSSLQRLLHSQGLPGGVFPDNVNSFDLDPTTGLLEVRLDGPCLAKFENRVFFESVVRANLSFGGLMGLEGLTQ EELFLWFPVKGLSVRDPDSGVILMDIGLARKQLPASLFEDPPSCEEAQGALMKKSRGVIGFGAER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	1.4	0.8964
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	2.0	0.8879
AT4G03600			unknown protein		Lus10039834 [exp]	3.9	0.8726
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	5.3	0.8555
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	6.5	0.8876
AT4G03600			unknown protein		Lus10018599 [exp]	6.9	0.8507
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	7.1	0.8406
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	7.2	0.8787
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	7.5	0.8429
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	8.0	0.8409

Compare expression of checked genes

Lus10020075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.