Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21350 324 / 5e-109 PUB8, B80 plant U-box 8 (.1) AT1G23030 128 / 2e-32 PUB11 ARM repeat superfamily protein (.1) AT5G42340 120 / 8e-30 PUB15 Plant U-Box 15 (.1) AT1G29340 99 / 3e-22 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 92 / 5e-20 ARM repeat superfamily protein (.1) AT1G60190 92 / 5e-20 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT3G54850 89 / 5e-19 ATPUB14 plant U-box 14 (.1) AT3G46510 89 / 6e-19 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G07360 84 / 2e-17 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G71020 84 / 2e-17 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006747 [exp] 552 / 0 AT4G21350 405 / 6e-141 plant U-box 8 (.1) Lus10000804 [exp] 195 / 1e-61 AT4G21350 127 / 1e-35 plant U-box 8 (.1) Lus10016565 [exp] 135 / 8e-35 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 133 / 7e-34 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 120 / 2e-29 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 119 / 3e-29 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10025885 [exp] 117 / 5e-29 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10007511 [exp] 117 / 2e-28 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10020413 [exp] 112 / 2e-27 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028800 [exp] 373 / 3e-128 AT4G21350 379 / 8e-131 plant U-box 8 (.1) Potri.011G033300 [exp] 360 / 2e-123 AT4G21350 405 / 7e-141 plant U-box 8 (.1) Potri.002G009900 [exp] 139 / 4e-36 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 120 / 9e-30 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.019G029500 [exp] 118 / 2e-29 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.010G185900 [exp] 113 / 4e-27 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.013G052500 [exp] 111 / 6e-27 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 109 / 5e-26 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G248600 [exp] 106 / 2e-25 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.010G113900 [exp] 101 / 3e-23 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10020077 pacid=23156178 polypeptide=Lus10020077 locus=Lus10020077.g ID=Lus10020077.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTCCTTCCCACCACCTCCCAGATGACTTCAAGTGTCCGATCTCCCTCGAGGTAATGTCCGACCCAGTAATCCTCTCCTCCGGCCACACTT TCGACCGCCCTTCCATCCAACGGTGGCTAGACTCCGGCCACCGTACTTGCCCCATCACCAACCTTCCTCTTCCACAACACCCTTCCCTTATCCCTAACCA CGCCCTCCGCTCCCTCATCTCCAATTACTCCCAAATCCCCTTACCCCCAAAATCCCCCTTCCCCAAATCCCAATCCCCACAAACCCTAATCTCCAATCTC ACCTCCCGATCATCATCATCATCATCGCCGAAGCTCGAGTCCTTATCCCACCTTGCCAAGCTCACCAAATCCTCCCCTTCCCTCCGCCGCCTCGTCACTG AATCCGGCGCCGTTTCATCTATCCTCTACTGCGTCGATTCCCCCATTTCCCCTCCCGTCCTTGAAAAGGCGCTCTCTTTACTCCTAAACCTCTCCTTAGA CGACGATAGCAAGGTGGGTTTGGTTGCGGAAGGGGCGATCGGGAGAGTAATTAGGGTTTTGCAGTCCGGTACGCCCGATTGCAGAGCGATCGGCTGTACG ATTCTGACGAGCTTGGCGGTGGTGGAGGTGAATAAGGCGACGATCGGGGATTATCCCAACGCGATTCGATCGCTGGTGAATTTGTTGGAGGTCGGGAAAG GGAGGGAGATTAAGGAGGCGGCGACTGCGCTTTACGCGATCTGCTCATTTCCGGATAACCGGAGGAAAGCGGTGGAGTGCGGCTCGGTTCCGGTTTTGGT TCGGTTGGTTAAGAATGGGATGGAAAGAGCTGTGGAGGTGTTGAGCTGTTTGGTTAAGTGTAAAGAAGGGAGATTAGAAATGGGGAAAGTTTTGGGATTT GTGGAGGTTCTGGTTAAGGTGGTTTGTAATGGGAGGAGCAGTGGGAAAGGGGTGCAATGTGCTTTGTTTACCCTGAATTCGCTATGTTTCTACGACGAGG AGGCTCGCGACGAGGCTAGGAGGTTAGGGGTTGTGGAGGTTTGCGTTGGGTTGGGGGAGGATGAGAATGATAAGGTTAGGAGGACTGCTGAGTGTTTGGT TCAAACTCTGAGGTTGGAGTAG
AA sequence Show only first row Show all	>Lus10020077 pacid=23156178 polypeptide=Lus10020077 locus=Lus10020077.g ID=Lus10020077.BGIv1.0 annot-version=v1.0 MASPPSHHLPDDFKCPISLEVMSDPVILSSGHTFDRPSIQRWLDSGHRTCPITNLPLPQHPSLIPNHALRSLISNYSQIPLPPKSPFPKSQSPQTLISNL TSRSSSSSSPKLESLSHLAKLTKSSPSLRRLVTESGAVSSILYCVDSPISPPVLEKALSLLLNLSLDDDSKVGLVAEGAIGRVIRVLQSGTPDCRAIGCT ILTSLAVVEVNKATIGDYPNAIRSLVNLLEVGKGREIKEAATALYAICSFPDNRRKAVECGSVPVLVRLVKNGMERAVEVLSCLVKCKEGRLEMGKVLGF VEVLVKVVCNGRSSGKGVQCALFTLNSLCFYDEEARDEARRLGVVEVCVGLGEDENDKVRRTAECLVQTLRLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	0	1
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	2.4	0.8910
AT2G25250			unknown protein		Lus10041025 [exp]	2.6	0.9034
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	3.5	0.9007
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	4.9	0.8895
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	5.9	0.8850
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	6.7	0.8798
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	7.7	0.8879
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	8.0	0.8659
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	10.7	0.8858
AT1G54150			E3 Ubiquitin ligase family pro...		Lus10000533 [exp]	12.7	0.8504

Compare expression of checked genes

Lus10020077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.