Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 373 / 3e-127 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05110 365 / 3e-124 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05140 361 / 1e-122 Nucleoside transporter family protein (.1) AT4G05130 360 / 2e-122 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 333 / 1e-111 ATENT7 equilibrative nucleoside transporter 7 (.1) AT3G09990 304 / 2e-100 Nucleoside transporter family protein (.1) AT1G70330 114 / 7e-28 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 91 / 4e-20 Nucleoside transporter family protein (.1.2) AT5G10010 43 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018413 [exp] 486 / 4e-171 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 483 / 1e-170 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 407 / 2e-139 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 372 / 5e-127 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 370 / 3e-126 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10013002 [exp] 108 / 5e-26 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10029162 [exp] 102 / 1e-23 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10002590 [exp] 94 / 1e-23 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1) Lus10030104 [exp] 99 / 1e-22 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032300 [exp] 404 / 1e-139 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 396 / 2e-136 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 394 / 2e-135 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 375 / 1e-127 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 349 / 5e-118 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 112 / 2e-27 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130000 [exp] 98 / 3e-22 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 97 / 3e-22 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 62 / 2e-11 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10020079 pacid=23156156 polypeptide=Lus10020079 locus=Lus10020079.g ID=Lus10020079.BGIv1.0 annot-version=v1.0 ATGCAGGTGTACAAATTCTATGCTAAGAAGACAGAAGGTGCGCCCGACGTTTCTTCGCATAAGTATCCTTTCATCAACAGGTATTACGGAAATGCTCCTG AGGAAATCACCATGGAATCTGCTACTAATTGGGAAGCTGACGAACAACCAGCGAGACTCGAGGGGAAGTACAAAGCTCTGTTTGTCTGTTGGATTCTGGG ATTCGGATCACTTGTTTCCTGGAACAGTATGCTAACCATTGGAGATTACTACTCCAATCTCTTCCCGCGTAACCTGGCGGGTTACTTGCTCTTCTTTGCC AGCAACTTCATGCTCCTTGTTGTGCCTGGATTTGGCTACATCAGGCAGAGGTGGAGCTGGGCATTTGTTGGAATCTGTTTGATTGCGGGAGCATTTGGAA TTGCTGATGCTCTTGTTCAAGGTGGAATAGTCGGAGACTTGTCTTTGATTTGCCCTGAGTTCATGCAGTCATTCTTTGCTGGGATGGCTGCTTCTGGAGC CATGACTTCGGCTTTGAGGCTGATTACGAAAGCAGCATTTGAGAATGCCAGTGACGATCTACGCAAGGGAGTTCCACTTTCTCTTGCAGTCTCAGCTTTC ATGGAGCTGCTATGCTTTCTACTGTATGCATTCTACGTCCCAAAGCTTCCTATAGTGAAGTACTACATGACTAAGACAGCCAAGGAAGGTTCGAAAACCG TCATAGCTGATCTGAAGGCTGCTGGCATTCAGACAGCAACTGAGCAGGGTGATGGATGCAAACCTACTGAGCCGCTTACCATCAAGCAGTTACTTCGTCA GAACATAGATTATTGTTTGGATTTGTACTTGATTCATGTCCTTACATTGTCTATCTTCCCTGGAGTCATTGCGGAGGACACTGCCAAACACCAATTGGGT TCATGGTACACACTGGTGCTGATTGCGATGTACAATGCCTTGGATCTCGTAGGCCGATACATTCCCCTGATCGAATGCCTGAACCTGAAGTCACGCAGTT GGCTGATGATAACGATCCTCTCTGGATTCCTGCTCGTCCCTGTATTCTACTTCACTGCCAAGTATGGAGATCAGGGATGTATGATCTTCCTAACCTCGTT TCTAGGACTCACTAACGGCTACCTCACCGTTTGTGTCATGACATTGGCACCAAAGGGCTACAAGGTTGGTTCTTGA
AA sequence Show only first row Show all	>Lus10020079 pacid=23156156 polypeptide=Lus10020079 locus=Lus10020079.g ID=Lus10020079.BGIv1.0 annot-version=v1.0 MQVYKFYAKKTEGAPDVSSHKYPFINRYYGNAPEEITMESATNWEADEQPARLEGKYKALFVCWILGFGSLVSWNSMLTIGDYYSNLFPRNLAGYLLFFA SNFMLLVVPGFGYIRQRWSWAFVGICLIAGAFGIADALVQGGIVGDLSLICPEFMQSFFAGMAASGAMTSALRLITKAAFENASDDLRKGVPLSLAVSAF MELLCFLLYAFYVPKLPIVKYYMTKTAKEGSKTVIADLKAAGIQTATEQGDGCKPTEPLTIKQLLRQNIDYCLDLYLIHVLTLSIFPGVIAEDTAKHQLG SWYTLVLIAMYNALDLVGRYIPLIECLNLKSRSWLMITILSGFLLVPVFYFTAKYGDQGCMIFLTSFLGLTNGYLTVCVMTLAPKGYKVGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10020079 [exp]	0	1
AT1G21090			Cupredoxin superfamily protein...		Lus10029783 [exp]	19.6	0.7940
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	35.3	0.7675
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	72.9	0.7237
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	74.3	0.7711
					Lus10015244 [exp]	83.0	0.7693
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	83.5	0.6967
					Lus10000079 [exp]	100.1	0.7537
					Lus10033479 [exp]	105.0	0.7606
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	128.1	0.7349
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	129.7	0.7524

Compare expression of checked genes

Lus10020079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.