Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61610 685 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 566 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G27290 550 / 0 S-locus lectin protein kinase family protein (.1) AT1G11350 545 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61500 531 / 4e-177 S-locus lectin protein kinase family protein (.1) AT1G11300 552 / 3e-176 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61490 524 / 3e-174 S-locus lectin protein kinase family protein (.1) AT1G61550 516 / 2e-171 S-locus lectin protein kinase family protein (.1) AT1G11280 516 / 6e-171 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61390 509 / 3e-168 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006742 [exp] 923 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 541 / 3e-180 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 529 / 1e-175 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 529 / 3e-175 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 526 / 1e-174 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 522 / 7e-172 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 515 / 2e-170 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 515 / 3e-170 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 512 / 4e-169 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037300 [exp] 754 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 754 / 0 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 748 / 0 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039300 [exp] 578 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 572 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G413800 [exp] 569 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039100 [exp] 564 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 562 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G414077 [exp] 560 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 558 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10020080 pacid=23156187 polypeptide=Lus10020080 locus=Lus10020080.g ID=Lus10020080.BGIv1.0 annot-version=v1.0 ATGTCGCTTAATCTGCATTTAGTTCATACCTTGTCATTCCTAATCCTCTCCTGCACTTCCTCCGCCGCAATAATCACTCAACTGACAGTCAACCAATCAT TAACCGACGGAGACGTCTTGGTTTCCAATCTCGACGACAACAGTAACGGATTCACACTGGGATTCTTTAGCCCCGGCAATGCCAGTACTAACCGTAGTAG GTATCTGGGCATCTGGTACAAGCAGGATGGGCCTCAATCGGGTCGAACCGTCATCTGGGTGGGTAACCCGGTAAGACCCATCCCCGACCGGAGCGGCGTA GTCACAATAGCTGCAGACGGTAACTTGATACTCTCCGACGGCAACGGAAGCACCATTTGGATGACTCGAGTCACCGTCACCTCCGCCGCCGCTTTCAGAA ACACGGCGGCGGTCTTGTCGGAGACAGGGAACTTGATTCTTTCGCCGGAAAGCAGCAGCGTCGATTTGAAAAGAGCATATTGGCAGAGCTTTAACGACCA GACGGACACATTCGTCCCCGGGATGCAAGTTCTCGTCGACGCTTCGGCCAGACCTGTGACCAACGACTTTACCTCGTGGAGATCCGAGGACGATCCTTAT CCGGGGAAATTCACGATGGGGGTGGACCCACAGGGCGGGCCCCAGATCGTGGTCTGGGAGAACCGGCAGCGGCTGGGGGGGACCGGGATGTGGAATGGGG AGGTTTTCACCGGTCTAGCGTCCAACAGCTTGTACGGATTCAACATCTCTAGTAGTGGAGACGAAGATGACGGGAAAAAGTACTTGAGCTGCGTGCCGAA GAATGCGGATGATCTGTTGAGGTTTCGAGTGGGATCTGACGGGAGGATGTTGGTGCTGAGGAGGAATAGCAGCCGGAATGCGTGGGATTTGGTGAAGACG CAGCCGTCCGGTGACTGCCAGCGGTGTATGGATGGTTTTGAGGCGGTGGATTTAGGGGAATGGAGGAAAGGGAATTGGTCTGGTGGGTGCCAGAGGATTA CGCCGTTGGTGTGTGGCGGCGACGGCGATGAGTTTAGAGAGCTGAGAAGTGGGAAGTTGCCGGATTTTGCGAATTTACGGCAGGTAGGGCCGGAGGAGGA TTCGTGCAGGAGAGTTTGTTTGACGGAATGCCAATGTGAAGCTTATGCAAAGGTGAACGGGATTGGATGCGTATTGTGGACGCAGGAATTGGTTGATGTT GTCCACCGTTTCAATGGATCTGACAATGTTCTCTACCTCCGCCTCGCTAATTCTCATCCCGAAAGCAACGGTGTGAAAGCAGGAGGTGGTAGGAGAGTAT CTGGAGCAGTGATAGCAGCCATAGTCGTTAGTTCAGTGATTTGTTTAGTTTCAGCAGTGTTGCTTCTTCGTTGCAGAATCAGAAGGAAACTACTAGAGGA TGAGATGCCTTTGAAGGACGTTCTTAAGAACCAAATGAATCCTATAGACATACCATTATTGAGTTTCGGTGTTGTTCAACTCGCTACGAATCACTTCTCC GTCGGTAACAAGTTGGGTGAGGGAGGATTTGGCCCTGTCTACAAGGGTACGCTCTCAGGAGGAGAGGAAATCGCTGTGAAGAGGCTGTCAAGGATATCTG GACAGGGTTTTGAGGAGTTTAAGAACGAAATCAATGTAATCGCCAAACTACAACACCGTAATCTGGTGAGGTTGTTAGGGTATTGTGTTCAGGAGGAAGA GAAGATGGTTGTCTATGAATACATGTCAAACAAAAGTCTGGACTTCTTCCTTTTCGATCCAACAAAGCAAGCAGCTTTGGATTGGGGGAAACGCTTAACT ATTATAGAAGGAATAGCACGAGGACTTCTTTACCTTCATCGCGATTCGAGACTCAGAGTTATTCACCGCGATTTAAAGGCAAGCAATGTTCTTCTCGATG ATGAAATGAACCCAAAAATTTCCGATTTTGGGATGGCCAGAATTTTTGGAGGCAACCCAAATGAAGCCGCCAACACCATTCGAGTCGTTGGGACGTACGG CTATATGTCACCTGAATACGCAATGGAAGGTTTATTTTCGGTGAAATCAGATGTGTACAGCTTTGGGGTATTAGTGCTGGAAATCGTGAGTGGAAGAAGG AATACAAGCTTTCGTTCCTCGGACCACGTTAGCCTTATTGCATATGCATGGGAATTATGGAGTCACGGCAGAGCACTTGAGTTGGTTGATTCTTCGATTC GAGATTCATGCACACGACGAGATGAGGAATTGTTGAGATGCATACAAGTAGGCATGTTGTGCGTGGAAGGAAACCCAAATGAGAGGCCAACAATGGCCGG CGTTATGTCGTGGATAGAGAGTGATAGTGTGAGCTTGCCAGTGCCCAGACAACCCAGTTATACTTGTTCAATGAGATCTTCTTCTTCTCCTTCCAGAGGC AGAAACCTTGATTCACAAGGAAATGATTTTGTATCAAATGGTGTGACTGTCACTACTCTTGCTATGAGGCCAAATGAAGAGGAGAAGCGGCGAGCTGTTA CTGCTAGATGGGTTCGACCTAGAATGGGAGCTGTGAAAGTCAATACTGATGTTGAAATATTTGGTGATGAAGGAATGGGAGTTGGGGAAGCAATGTATGG ATGA
AA sequence Show only first row Show all	>Lus10020080 pacid=23156187 polypeptide=Lus10020080 locus=Lus10020080.g ID=Lus10020080.BGIv1.0 annot-version=v1.0 MSLNLHLVHTLSFLILSCTSSAAIITQLTVNQSLTDGDVLVSNLDDNSNGFTLGFFSPGNASTNRSRYLGIWYKQDGPQSGRTVIWVGNPVRPIPDRSGV VTIAADGNLILSDGNGSTIWMTRVTVTSAAAFRNTAAVLSETGNLILSPESSSVDLKRAYWQSFNDQTDTFVPGMQVLVDASARPVTNDFTSWRSEDDPY PGKFTMGVDPQGGPQIVVWENRQRLGGTGMWNGEVFTGLASNSLYGFNISSSGDEDDGKKYLSCVPKNADDLLRFRVGSDGRMLVLRRNSSRNAWDLVKT QPSGDCQRCMDGFEAVDLGEWRKGNWSGGCQRITPLVCGGDGDEFRELRSGKLPDFANLRQVGPEEDSCRRVCLTECQCEAYAKVNGIGCVLWTQELVDV VHRFNGSDNVLYLRLANSHPESNGVKAGGGRRVSGAVIAAIVVSSVICLVSAVLLLRCRIRRKLLEDEMPLKDVLKNQMNPIDIPLLSFGVVQLATNHFS VGNKLGEGGFGPVYKGTLSGGEEIAVKRLSRISGQGFEEFKNEINVIAKLQHRNLVRLLGYCVQEEEKMVVYEYMSNKSLDFFLFDPTKQAALDWGKRLT IIEGIARGLLYLHRDSRLRVIHRDLKASNVLLDDEMNPKISDFGMARIFGGNPNEAANTIRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEIVSGRR NTSFRSSDHVSLIAYAWELWSHGRALELVDSSIRDSCTRRDEELLRCIQVGMLCVEGNPNERPTMAGVMSWIESDSVSLPVPRQPSYTCSMRSSSSPSRG RNLDSQGNDFVSNGVTVTTLAMRPNEEEKRRAVTARWVRPRMGAVKVNTDVEIFGDEGMGVGEAMYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020080 [exp]	0	1
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	1.7	0.8801
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	3.5	0.8669
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	5.9	0.8557
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	6.9	0.8480
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	7.7	0.8781
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	11.1	0.8683
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	11.6	0.8606
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	15.8	0.7267
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	18.2	0.8487
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	20.0	0.8563

Compare expression of checked genes

Lus10020080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.