Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49710 855 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 496 / 9e-166 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 477 / 6e-159 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G02010 466 / 2e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 467 / 7e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 454 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 448 / 3e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 439 / 4e-143 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 439 / 2e-142 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 438 / 4e-142 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030908 [exp] 496 / 4e-160 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 479 / 4e-159 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 488 / 5e-157 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 468 / 2e-154 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 463 / 3e-152 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 462 / 2e-151 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 447 / 3e-146 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015256 [exp] 441 / 2e-145 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 438 / 2e-144 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012500 [exp] 973 / 0 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 525 / 3e-177 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 494 / 1e-164 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 493 / 4e-164 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 476 / 1e-155 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 471 / 7e-155 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 458 / 6e-151 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 461 / 6e-149 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 454 / 4e-148 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 452 / 5e-148 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020081 pacid=23156179 polypeptide=Lus10020081 locus=Lus10020081.g ID=Lus10020081.BGIv1.0 annot-version=v1.0 ATGAACCACACCCACAACTTGTTCCGCAACCTCCTCAAAACATGCATCCTCAACAGGGATCTCTTCACAGGGAAATGCCTCCACGCTCAGTACCTCAAAC GCTTACTCCCTCCTTCAACTTACCTCTCCAATCACTTCATCCTCCTTTACTCCAAATCAGGCCGCTTCATCTCCGCCCGCCGCGCATTTGATCAGACCCG CGACCCCAATGTCTTCTCTTACAACGCCCTGCTGGATGCTTACGTGAAACAATCGCTCCCTGAACTTGCCCGCCAACTGTTCGATGAAATTCCTCACCCG GACCTGGTTTCCTACAACACCCTCCTTTCCTCCTATGCTGATTGCGGGAATGCCGCAGCTGCGTTGGGGTTGTTTGGGGAAATGAGAAGGGAAGGTATTG ATGCTGATGGATTCAGTGTCTCTGGAGTTATCACTGCTTGCTGCAATCAGGTGGCTTTACTTACACAGTTGCATTCTCTTGCTGTTTCATGCGGGTATGA TTCTTATGCTTCGGTCAGTAATTCGCTTCTTACGTATTACGGGAAGAACGGGCTTTTGGAAGAAGCTAAATCGGTGTTCCTTGGGATGGGAGAATATGTT AGAGATGAAGTTTCTTGGAACTCTATGATTGTGTCTTATGGACAGCATAAGGAAGGGGTTAAAGCAATGGATTTGTTTAGGCAAATGGTTCATGGAGGAC TTTTAGTTGATGTATTCACGATAGCAAGTATGTTGACTGCATTTACGAGTCCAAATGATTTATCTTGCGGTCTTCAGCTCCATGGAAGATCGATCAAGAC CGGTCTGCATTGTAACAGCCATGTGGGGAGCGGATTGATTGATATGTACGCAAAATGTGGAGACGATATGAAGGAGTGCAAGAAAGTTCTTGAAGAAGTG ATGTCACCAGATTCTGTTGTGTGGAACACAATGATTGCCTGCTACTCGAGAGACGAGGAAATGTCCGAAAAGGCCCTGCATTGTTTGAAACAAATGCAGC TCGCTGGTCATAAACCTGACGATTGTACCCTTGCATGCACCCTTAGTTCTTGTTCCACTCTCTCCTCTCCTTCATTGGGGAAGCAGCTTCATGCTTTAAC GATAAAATCAGACATCCCTTCAAACAGAATCCAAGTGAATAACTCCCTTCTCGCGATGTATTCACGATGCGGAAATCTCGAAGATGCGAGACGAGTATTT GATAGGATGACGGAGCGCAACCCTGTATCTTTGAACTCCATCATTGCGGGATATGCACAACACGGTAAGGGGGAAGAATCAGTACGGCTTTTCGAGAAAA TGATTCGAATTATGAACATGGTTCCTACGAGTATAACATTCATTGCTCTCCTTTCCGCCTGTGCACACACTGGTAAGTTAGTGGAAGGGAGGAGATATTT CGATATGATGAAACGAGAATTCGGGATAGAACCAGAAGCTGAACACTTCTCCTGCATGATTGATCTTCTTAGTCGAGCTGGAAAGCTGGGAGAAGCCACG AGACTCATCGAAACAATGCCCTTCTCCCCGGGCACTGCTGAATGGTCAACTTTGCTCGGAGCCTGTAGGAAGCATGGAAATTTGGAAATAGCAGAGAAGG CAGCAAATAAGCTGTTACAGTTAGAACCAGGAAATGCTACACCCTATGTTCTGCTTTCGAATATCTATACAGATTCTGGGAAATGGGAAGAAGTGGCCAG AGTTCGAAAGCTGATGCGAGAGCGAGGAGTGAAAAAGCTTCCGGGATGCAGTTGGCTTGAGTTGCAGAAGAAGGTACATGTTTTCGTAGCAGAAGACAAT TCACATCCGATGATGAACCAGACTCGTGCCTATCTGAACTGGATAATGATGAAGATCAAACAAGCTGGATACGTGCCGGATCTGAGATGTGCATTGGTTA AAGATGACGATGAGAAGACAAGGGAAGCGAATAAAGAGATGAGTTTAAGGCATCACAGTGAGAAACTGGCTGTTGCATTCGGACTGATGTCGACTAGAGA TGGGGTGCCTATAACTGTGATGAAGAACTTGAGGATATGTGGGGATTGCCACAATGCAATGAAGTATATTTCTGTTGTTAGTTGTAGGAAAATTACTGTG AGGGATGCCAATAGATTTCATTGTTTTGAACAAGGCTATTGTTCTTGTGGAGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10020081 pacid=23156179 polypeptide=Lus10020081 locus=Lus10020081.g ID=Lus10020081.BGIv1.0 annot-version=v1.0 MNHTHNLFRNLLKTCILNRDLFTGKCLHAQYLKRLLPPSTYLSNHFILLYSKSGRFISARRAFDQTRDPNVFSYNALLDAYVKQSLPELARQLFDEIPHP DLVSYNTLLSSYADCGNAAAALGLFGEMRREGIDADGFSVSGVITACCNQVALLTQLHSLAVSCGYDSYASVSNSLLTYYGKNGLLEEAKSVFLGMGEYV RDEVSWNSMIVSYGQHKEGVKAMDLFRQMVHGGLLVDVFTIASMLTAFTSPNDLSCGLQLHGRSIKTGLHCNSHVGSGLIDMYAKCGDDMKECKKVLEEV MSPDSVVWNTMIACYSRDEEMSEKALHCLKQMQLAGHKPDDCTLACTLSSCSTLSSPSLGKQLHALTIKSDIPSNRIQVNNSLLAMYSRCGNLEDARRVF DRMTERNPVSLNSIIAGYAQHGKGEESVRLFEKMIRIMNMVPTSITFIALLSACAHTGKLVEGRRYFDMMKREFGIEPEAEHFSCMIDLLSRAGKLGEAT RLIETMPFSPGTAEWSTLLGACRKHGNLEIAEKAANKLLQLEPGNATPYVLLSNIYTDSGKWEEVARVRKLMRERGVKKLPGCSWLELQKKVHVFVAEDN SHPMMNQTRAYLNWIMMKIKQAGYVPDLRCALVKDDDEKTREANKEMSLRHHSEKLAVAFGLMSTRDGVPITVMKNLRICGDCHNAMKYISVVSCRKITV RDANRFHCFEQGYCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	0	1
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	1.7	0.8617
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	6.0	0.8421
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	6.6	0.8051
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	7.7	0.8040
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	8.2	0.8398
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	8.4	0.8448
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	8.5	0.8206
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	8.7	0.8248
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023167 [exp]	11.0	0.7752
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	12.6	0.7889

Compare expression of checked genes

Lus10020081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.