Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 430 / 5e-144 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 410 / 2e-136 S-locus lectin protein kinase family protein (.1) AT4G23180 390 / 1e-130 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G03230 392 / 1e-127 S-locus lectin protein kinase family protein (.1) AT4G23230 377 / 1e-127 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23140 374 / 5e-124 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT1G11340 379 / 1e-123 S-locus lectin protein kinase family protein (.1) AT4G23130 371 / 4e-123 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23150 370 / 5e-123 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G27300 374 / 2e-122 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006742 [exp] 608 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 504 / 9e-172 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 507 / 2e-165 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10020080 [exp] 481 / 2e-163 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 389 / 5e-134 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 386 / 7e-129 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 389 / 5e-128 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 384 / 6e-126 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 392 / 7e-126 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037300 [exp] 472 / 3e-160 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 471 / 4e-160 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 466 / 9e-158 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 449 / 2e-151 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 411 / 2e-136 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.005G014802 [exp] 398 / 5e-136 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G027501 [exp] 399 / 2e-134 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 397 / 3e-133 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.019G119700 [exp] 404 / 8e-132 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 403 / 1e-131 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020083 pacid=23156181 polypeptide=Lus10020083 locus=Lus10020083.g ID=Lus10020083.BGIv1.0 annot-version=v1.0 ATGACTGCAATTTGTTGCAGTAGTATTGCAGAAGCAGAGAAGTTTTCGGTTTTTCTCATCAGGTGGCTGCAGGAATTTGTCAAGACCAAAGAGAATATCA GAGGTGTGATAGCAGGGATTGTAGTTGGGGGAGTGGTCGGTTTAGCCGCGGCAGCATTGCTGTTCGGTTGCGGAATTAGAAGAAAGAAGCTTAAAGGTGA CTCTGAGATGCCGTTGAATGATGCAATGAAGAACAGCAGTGCATATTCCACTGCCGGACTTGCTGAAGATGAGTTTTCTATGGAGAACAAGTTGGGTCAG GGTGGGTTTGGCCCTGTTTACAAGGGACGGCTTCCAGGAGGAGAGGAAATCGCTGTGAAGAGGCTGTCGAAAATATCAGGGCAGGGTCTGGAGGAGTTCA AGAATGAAATCAGCTTGATCGCAAAATTGCAGCATAGGAATTTGGTTAGGTTGTTAGGCTACTGTGTTCATGACGTGGAAAAGGTGTTGATTTACGAGTA CATGCCCAACAAAAGTTTGGACTTCTTTCTCATTGGTAAACCCAGCAAAGCATCTTTGAGTTGGAGGAAACGCTTGACGATTATCGAAGGAATAGCGAGA GGCCTCCTTTACCTTCACCGAGATTCGAGACTCCGAGTCATTCATCGAGACTTGAAGGCCAGCAATGTCCTGCTCGACGAGGAAATCAACCCTAAGATCT CGGACTTCGGAATGGCAAGAATCTTCAGTGGCAACCAAAATGAAGGCAACACCAATCGAGTAGTTGGGACATACGGGTACATGTCACCCGAATATGCAAT TGGAGGACTGTTCTCGGTTAAGTCGGATGTTTACAGCTTTGGAATATTGGTTCTAAAGATCGTGAGTGGAAGGAAGAACACAAGCTTTCGATTCTCGGAC CATGCCTGGGAGTTGTGGAGCCAAGGCACAGCAATGGAGATTGTGGATTCATCAATTCGAGATTCATGCACGCAGGACGAAATGCTGAGGTGCATACAAG TAGGGATGTTGTGTGTGCAAGGAGACCCGGTTCATAGACCGACGATGGCGGAGGTGATGTTGATGATGGAAAAGGATAGCCAAAGCTTGCCAATGCCAAG GCAGCCTACTTTCACTTCTAATTCCACGAGAAGAGGTTCTGTATTCAGAGATGTCGATTCGGAAGGTCAGATTAGTGTGTCGAATGATTTGACCGTTACG ATGGTTGTGGGACGATGA
AA sequence Show only first row Show all	>Lus10020083 pacid=23156181 polypeptide=Lus10020083 locus=Lus10020083.g ID=Lus10020083.BGIv1.0 annot-version=v1.0 MTAICCSSIAEAEKFSVFLIRWLQEFVKTKENIRGVIAGIVVGGVVGLAAAALLFGCGIRRKKLKGDSEMPLNDAMKNSSAYSTAGLAEDEFSMENKLGQ GGFGPVYKGRLPGGEEIAVKRLSKISGQGLEEFKNEISLIAKLQHRNLVRLLGYCVHDVEKVLIYEYMPNKSLDFFLIGKPSKASLSWRKRLTIIEGIAR GLLYLHRDSRLRVIHRDLKASNVLLDEEINPKISDFGMARIFSGNQNEGNTNRVVGTYGYMSPEYAIGGLFSVKSDVYSFGILVLKIVSGRKNTSFRFSD HAWELWSQGTAMEIVDSSIRDSCTQDEMLRCIQVGMLCVQGDPVHRPTMAEVMLMMEKDSQSLPMPRQPTFTSNSTRRGSVFRDVDSEGQISVSNDLTVT MVVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	0	1
					Lus10030789 [exp]	5.5	0.9016
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	7.6	0.9331
AT1G30050			unknown protein		Lus10035609 [exp]	11.1	0.9309
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	12.7	0.9298
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10039747 [exp]	13.1	0.8853
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	16.0	0.9230
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	18.0	0.9220
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	18.7	0.9225
AT5G58610			PHD finger transcription facto...		Lus10018681 [exp]	19.4	0.8510
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	22.0	0.8617

Compare expression of checked genes

Lus10020083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.