Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21430 488 / 8e-157 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT4G00990 432 / 1e-136 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 286 / 3e-82 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 271 / 1e-76 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 209 / 1e-55 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT3G07610 177 / 4e-45 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT2G36400 51 / 3e-06 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 50 / 5e-06 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G37740 50 / 8e-06 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 49 / 1e-05 GRF ATGRF1 growth-regulating factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006741 [exp] 1581 / 0 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020033 [exp] 423 / 3e-132 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10027890 [exp] 394 / 1e-119 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 370 / 2e-112 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 358 / 1e-107 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10002391 [exp] 264 / 4e-73 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 231 / 6e-63 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10025380 [exp] 189 / 1e-49 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 157 / 4e-41 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032700 [exp] 1068 / 0 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 978 / 0 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G091200 [exp] 442 / 3e-137 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.013G019000 [exp] 389 / 6e-119 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G027000 [exp] 334 / 5e-101 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 285 / 2e-80 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 282 / 2e-78 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 268 / 3e-74 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.011G009700 [exp] 257 / 6e-71 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G026950 [exp] 54 / 9e-08 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10020084 pacid=23156246 polypeptide=Lus10020084 locus=Lus10020084.g ID=Lus10020084.BGIv1.0 annot-version=v1.0 ATGGCGGAGAATGGGTCTCTGCCGGACCACCTCCGGTGCAAGCGTACCGACGGCCGGCGGTGGAGGTGCAGCCGGCGGGTAGCGGCAGGGAAGAAGCTCT GCGAAATTCACCACCTCCAAGGGAAGCACAGGCAGAACAGATGGAAAGTTCCCGAGTCACTGAAGATACAGAGGGAGTATGGCAATGCCAAGGGTAGATT TAGGGCACAGAATGGGGAGGTGAAATTGGGGAAGAACAAGAACAAAAAGAAGAGGAAGAAGTTTGAAGAAGATGGGTTAGTAGACGAGGTTAAGAAGAAG AAGATGAAGAGGAATAAGGCCAAGAAGAATGCGTTACAGTTTGAGCTGATTAGGATGGTTTTGAAGAGGGAAGGGGAAAAAAGGAATAAGAATAAAAGGA AGAGTGATTCTGATACTGATAAGAGTGAGGAAGAAGAAGAAGAGGAAGAGGAAGAAGAATTGATGCAGGACTTGCCTAATGGGTTCATGGCTATATCTCC AGCTAAACATTTCAACAATGTGGGTTCTTGTTCAGTTTCAACAACTTCCTGCGAGGTCAAAATTGGTGCTGATTTCAGTCCGAGAAGGCGCTTTCGGTCT AAGAACATCGAGCCTGTCCCTATTGGTTCTCTGCAGGTTTTGCCTGGGAAGAGGGATATGGTTGAAGTTAGGGGAGGGAAGAAAATGAAGAAGAAGAAGT GTCATTGGTGTAGGAAGAGTGGTTTGAGTAACTTGATAAGATGTTCCAGTTGTAGGAAGGAGTTCTTCTGTACCGACTGCATCAAAGACCAGTACTTTGA TGAGCAAGAAGAAGTTGAGACTGCTTGTCCAGTGTGTCGTGGAGCTTGTGGCTGTAAGGCCTGCACGGCAATTCGATTCAGGGACAGAGAATATGAGGAA GTCTCTAATGAGGGAAGGCAAGTTAACAAGGTTTTGTATTTCCATTATATGATCTGTATGTTGCTTCCGATGCTGAAACAAATGAACAAGGACCTTGCTG CTGAAACGAAGATGGAGGCCAAAGTAAAAGGTCTAAAACCTTGCGAAATTGAAGTCCAGCAGGCTAAAGTAAGCAGCAACCAACGTTCGTGGTTTGTTCT TTTCTTTCTCCAGATCTATGATGATCAGATTTCACAGTTTCAATTCATTATTTCTTCACCAGAGTTCTCACTTTCTTGCTTCTCTGTCATGCGATGCAGT AATAATTGCAAGGTCTCGATTGCGGATTTCCATAGAAGCTGCCAAAGTTGCTCCTATAACTTGTGTTTGAGTTGTTGTCGAGGTGTTTTCCAAACGAGCA TTCACAGAAATGGCAATTCACTTGTTACCAAATACCCTACTAGAAGGAAAGCTCTCATTTCCAGCATACAATCGCCTGAGATGATAGCATTATGCACCAA TAAAAAGAGATTTCTTGGTAATCGTCTTAGGTCTCCGATAGATTTTGATGGTTGTGATGGTATATCTTGTCCCCCTTCCGAGTTCGGCGGTTGTGGCAAT AGCCTGCTTGAGCTAAGCTGCATTTTCCCATCAAGTCAGGCTACGGAGCTGGAAACAAGTGCAGAAGAGCTTATTGGCTGCTATGAGTTGCCAGAAACCT TGGACATCGACTCTAGCTGTTCATTATGTACTGAAACTGACCTTGAAACCAACGAGACTAAGAAGTCACTAGAAGCCTCCGCAAGAGAAGATTCGCATGA TAATCTCTTGTACAGTCCTAGTGTACTAGACATTACTGGTGATAACCTCGAACACTTCCAGAAACATTGGGGCAAAGGTCAACCAGTCAAAGTCCGTAAT GTGCTTCTCGGTACATCTGATCTCAGCTGGGATCCAATTGTCATGTTCTGCACTTATCTTAAGAATAACACCGGTGCACCTGTCGATACCAAGGATTGCT TGGACTACTTTGAGGTTGAAATTGGTGTCCGGCAGCTATTCATGGGATCCATCAGGGCTCCAAAGAATGCGAATATGTGGCATGAGGGCCTGAAGTTGAA GGGATGGCTCTCTTCTCATGTAATTCAAGAACATCTTCCAGCTCATTACGCTGAAGTTCTTCATGCTCTACCGCTTCCAGAATACATGGATCCCACATCG GGTGTATTAAATGTAGCGGCAGAGTTGCCACAGGAAATCGCGAAGCCTGATTTGGGTCCTTGCATCTATATCTCATACAACAGTGGGGAGAATAATATCC TGGCTGATTCAGTCTCCAAATTGCGATATGATACATATGACATGGTTAACATCCTGGTCCATGCCGCTGACGCTCGTGTATCGACAGAACAGCTTAACTA TATACGAAAGTTGATGAAAAAGAACAGTGAAAATAATAGAGTGAACGGGGAACCACTCCCTGATCGAGGAAACATTGACGAATTAAGATTGCACGACCTG GTCCAGGAACATACTCAATTACACAACAAAGTTGCTAGAGTATCTTGGTTCACTGCTTCGGCGCATGGACCTATTGAACAAGATGCCGGGGCTTTTCATG ATAGAGTGCCTCCAAACTCCGATTCAGATTCCGACACCAATACTGATACTGATTCAGATACAGATACAGACACAGATAGTGAAATATCAAAGTTTTTGTT TTCCCACGTCAAAGGCTCAAGAACTTCGGAGCACCCGCGCATGGAAACCTCCGAAAACGATTCTGTAACGGAGAAACGAGATGAATCTTGTGGAGCCATA TGGGATGTGTTCCGTAGACAGGATGTTCCTAAGCTTGTTGAGTATCTAAGACAGCAGTGCAACAAATTTACAGATGGATATGGCTCCAGAAAACAACAAG TTACTCATCCATTACATGATCAAATATTCTTCCTCGACGCAGTTCATAAAAGGAGGCTTAAGGAGGAGTTTGAGATTGAACCTTGGACTTTTGAGCAACA CATAGGAGAAGCTGTCGTTGTTCCTGTTGGATGCCCTTATCAGATTAGGAATCTCAAGTCATGTGTTAATGTGGTGCTGGACTTTGTATCTCCCGAAAGC GTGACTCATTCCATCCAATTGATTGATGACCTGCGGTTGCTTCCAGATCAGCACAAAGCCAAAGTTGACTGCTTGGAGGTGAAGAAAATGGCTCTCCACG GAGTCAGTCGAGCCATTAAAGAAATCCGTGAGCTTACATCATCCACCGAATAA
AA sequence Show only first row Show all	>Lus10020084 pacid=23156246 polypeptide=Lus10020084 locus=Lus10020084.g ID=Lus10020084.BGIv1.0 annot-version=v1.0 MAENGSLPDHLRCKRTDGRRWRCSRRVAAGKKLCEIHHLQGKHRQNRWKVPESLKIQREYGNAKGRFRAQNGEVKLGKNKNKKKRKKFEEDGLVDEVKKK KMKRNKAKKNALQFELIRMVLKREGEKRNKNKRKSDSDTDKSEEEEEEEEEEELMQDLPNGFMAISPAKHFNNVGSCSVSTTSCEVKIGADFSPRRRFRS KNIEPVPIGSLQVLPGKRDMVEVRGGKKMKKKKCHWCRKSGLSNLIRCSSCRKEFFCTDCIKDQYFDEQEEVETACPVCRGACGCKACTAIRFRDREYEE VSNEGRQVNKVLYFHYMICMLLPMLKQMNKDLAAETKMEAKVKGLKPCEIEVQQAKVSSNQRSWFVLFFLQIYDDQISQFQFIISSPEFSLSCFSVMRCS NNCKVSIADFHRSCQSCSYNLCLSCCRGVFQTSIHRNGNSLVTKYPTRRKALISSIQSPEMIALCTNKKRFLGNRLRSPIDFDGCDGISCPPSEFGGCGN SLLELSCIFPSSQATELETSAEELIGCYELPETLDIDSSCSLCTETDLETNETKKSLEASAREDSHDNLLYSPSVLDITGDNLEHFQKHWGKGQPVKVRN VLLGTSDLSWDPIVMFCTYLKNNTGAPVDTKDCLDYFEVEIGVRQLFMGSIRAPKNANMWHEGLKLKGWLSSHVIQEHLPAHYAEVLHALPLPEYMDPTS GVLNVAAELPQEIAKPDLGPCIYISYNSGENNILADSVSKLRYDTYDMVNILVHAADARVSTEQLNYIRKLMKKNSENNRVNGEPLPDRGNIDELRLHDL VQEHTQLHNKVARVSWFTASAHGPIEQDAGAFHDRVPPNSDSDSDTNTDTDSDTDTDTDSEISKFLFSHVKGSRTSEHPRMETSENDSVTEKRDESCGAI WDVFRRQDVPKLVEYLRQQCNKFTDGYGSRKQQVTHPLHDQIFFLDAVHKRRLKEEFEIEPWTFEQHIGEAVVVPVGCPYQIRNLKSCVNVVLDFVSPES VTHSIQLIDDLRLLPDQHKAKVDCLEVKKMALHGVSRAIKEIRELTSSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	0	1
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10039606 [exp]	1.7	0.9275
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	2.4	0.9282
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	2.8	0.9305
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	3.5	0.9265
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	4.2	0.9138
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10029510 [exp]	5.8	0.9047
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10042602 [exp]	6.3	0.9224
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	8.8	0.8679
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	9.2	0.8985
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	9.5	0.9180

Compare expression of checked genes

Lus10020084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.