Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62980 644 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT1G12820 644 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 627 / 0 AFB2 auxin signaling F-box 2 (.1) AT4G03190 598 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT4G24390 563 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT5G49980 558 / 0 AFB5 auxin F-box protein 5 (.1) AT2G39940 313 / 3e-99 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 109 / 5e-25 F-box/RNI-like superfamily protein (.1) AT5G67250 74 / 1e-13 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT5G25350 71 / 1e-12 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006738 [exp] 1164 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018426 [exp] 1031 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 900 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 895 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 674 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 645 / 0 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 565 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 481 / 2e-166 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011261 [exp] 361 / 2e-123 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 975 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 974 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 648 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 645 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 631 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 622 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 596 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 589 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 305 / 6e-96 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 301 / 2e-94 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020086 pacid=23156226 polypeptide=Lus10020086 locus=Lus10020086.g ID=Lus10020086.BGIv1.0 annot-version=v1.0 ATGGATCGGAGCCCCAAACGGACCGCCACCACCAACCTCTTCCCCGACGAGGTACTCGAGCGAGTCCTCTCTCTGGTCAAATCTCACAAGGACCGTAGCT CCGTCTCCTTGGTCTGCAAGGACTGGTACAGCGCCGAGAGCTGGTCCAGGACTCACGTCTTCATCGGGAACTGCTATTCAGTCTCACCTGAGATCGTCGT CCGCCGCTTCCCTAGGATCCGGAGTGTCACGCTCAAGGGGAAACCGAGGTTCTCCGATTTCAACCTCGTCCCTGACAACTGGGGCGCCGATGTGCAGTCG TGGCTGGAGGTGTTCGCGTCTGAATATCCGTTCCTTGAGGAGCTTCGGTTGAAGAGAATGAGGGTTACCGACAAGAGCTTGCAGTTCTTGGCTCTTAAGT TTCCTAATTTCAAAGCTCTTTCGCTGTTGAGCTGCGACGGATTCAGTACTTGCGGACTTGCCGCCTTCGCCGCTCATTGCAGGAATCTGACTGAGCTGGA CATACAGGAGAACGGCATAGAAGACAGCAGTGGGGATTGGTTAAGCTGTTTTCCTGAGAACTTCAACTCATTAGAAGTGCTCAATTTCTCGAACTTGAAC ACTGATGTGAACCCTGAAGTTCTCGAGAGGCTTGTAAGAAGATGCAGATCGTTGAAGGTTCTCAAAGTTAACAGGAGCATTTCACTGGATTGTCTCCAGA GGTTGCTTTGTTATGCACCTCAGTTGACTGAACTCGGTGCTGGCTCTTTCTCACAAGAACTCACGCCACGCCAGTATTCTGATCTGGAACATGCTTTCAG TCTATGCAAGAATCTCAATGTACTTTCTGGTTTGTGGGAAGCAACAACGTTGAATCTCTCAGCTATCTACCCGTCCTGCTCACGGCTCACTTTCCTAAAC TTGAGTTACGCTGCTTTGCAAAGTCAAGAACTCGGTAGTCTGCTTCCTCATTGCCCTTCTCTTCGCCGCCTCTGGGTTCTGGACTCAGTTGGAGACAAAG GACTAGAAGCTGTAGGAGAGAAATGTCCTTTGTTGGAAGAGCTTCGAGTCTTCCCAGCCGATCCCTTTGACGAGGACATGCTTCATGCAGTAACTGAAGA AGGTATCGTTGCTGTCTCGCAAGGATGCCGAAAGCTCCACTACATCCTCTACTTCTGCCGTCAAATGACTAATGATGCTGTAGCAACAGTCGTCAAAAAC TGCCCCGACTTCACCCACTTCCGTCTCTGCATCATGAATCCTGGCCAACCAGACCATGTCACCAACGAACCAATGGACGAAGCCTTTGGTGCGGTGGTCA AAACCTGCAAGAAGCTCCAGAGGCTCTCCGTTTCGGGGCTCCTCACCGATTCAACATTCGAGTACATCGGCCGATATGCGAAGAATTTAGAAACCCTATC GGTAGCCTTTGCTGGAAGCAGCGATCTTGGGATGCAGTCCATTTTAGAAGGCTGCCCGAAGTTGAGGAAGCTCGAGATCCGAGACTGCCCCTTTGGAAAC GCGGCGCTGCTTTCAGGGTTGGAGAAGTATGAGTCGATGAGGTCGCTCTGGATGTCGGCTTGCAACGTGACGATGAGCGGGTGCAGGGTGTTGGCTAGGG AGATGCCGAGGTTGAATGTAGAAGTGATGAAGGAGGAAGGGAGTGACGATTGTAAAGCCGATAAGGTTTACGTTTATCGGACTGTTGCTGGTCCGAGAAG AGATGCTCCGCCTTCTGTGATGACCATCTCAAGTGTATGA
AA sequence Show only first row Show all	>Lus10020086 pacid=23156226 polypeptide=Lus10020086 locus=Lus10020086.g ID=Lus10020086.BGIv1.0 annot-version=v1.0 MDRSPKRTATTNLFPDEVLERVLSLVKSHKDRSSVSLVCKDWYSAESWSRTHVFIGNCYSVSPEIVVRRFPRIRSVTLKGKPRFSDFNLVPDNWGADVQS WLEVFASEYPFLEELRLKRMRVTDKSLQFLALKFPNFKALSLLSCDGFSTCGLAAFAAHCRNLTELDIQENGIEDSSGDWLSCFPENFNSLEVLNFSNLN TDVNPEVLERLVRRCRSLKVLKVNRSISLDCLQRLLCYAPQLTELGAGSFSQELTPRQYSDLEHAFSLCKNLNVLSGLWEATTLNLSAIYPSCSRLTFLN LSYAALQSQELGSLLPHCPSLRRLWVLDSVGDKGLEAVGEKCPLLEELRVFPADPFDEDMLHAVTEEGIVAVSQGCRKLHYILYFCRQMTNDAVATVVKN CPDFTHFRLCIMNPGQPDHVTNEPMDEAFGAVVKTCKKLQRLSVSGLLTDSTFEYIGRYAKNLETLSVAFAGSSDLGMQSILEGCPKLRKLEIRDCPFGN AALLSGLEKYESMRSLWMSACNVTMSGCRVLAREMPRLNVEVMKEEGSDDCKADKVYVYRTVAGPRRDAPPSVMTISSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	0	1
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	1.4	0.8535
AT1G68490			unknown protein		Lus10038934 [exp]	4.7	0.8634
AT3G02555			unknown protein		Lus10027224 [exp]	8.7	0.8508
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	10.1	0.7743
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10023691 [exp]	11.0	0.7445
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	13.9	0.7926
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	19.9	0.7843
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	23.0	0.8348
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	24.3	0.8005
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	25.3	0.7683

Compare expression of checked genes

Lus10020086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.