Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05020 864 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 848 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 768 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 723 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G07180 208 / 3e-60 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 207 / 7e-60 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT3G44190 61 / 6e-10 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 59 / 5e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G08740 55 / 1e-07 NDC1 NAD(P)H dehydrogenase C1 (.1) AT5G03630 54 / 2e-07 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006737 [exp] 1116 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 1035 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 926 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 732 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10002599 [exp] 729 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 701 / 0 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10039769 [exp] 699 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018540 [exp] 697 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039768 [exp] 692 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034100 [exp] 930 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 917 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147300 [exp] 786 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400 [exp] 780 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 753 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 248 / 6e-75 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 247 / 2e-74 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 210 / 4e-61 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 66 / 2e-11 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G098700 [exp] 53 / 3e-07 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10020087 pacid=23156137 polypeptide=Lus10020087 locus=Lus10020087.g ID=Lus10020087.BGIv1.0 annot-version=v1.0 ATGAAAGCGATCAAGTTGTTCGAGAGAGCTTCTAGAACGTATCATGACAGTTCCTCGCTCTCTAAACTGGTCGTCGTCTTCACTGTCAGTGGTGGAGGAC TTGTTGCTTATGCTGATGCAAACTCGTTGAGTCATGTTGCTCCACCCGAGATCAAGAAGAAGAGGGTGGTTGTTCTGGGAACTGGATGGGCAGGGACGAG TTTCTTGAAGCAGTTGAATGATCCTTCCTATGATGTTCAAGTGATATCTCCTCGGAATTACTTTGCATTCACTCCTCTGTTACCGAGTGTTACTGTTGGA ACAGTGGAACCTCGCAGCATCGTGGAACCGATCCGTAACATTGTCAAGAAGAAAAACGTTGATGTCCGTTACTGGGAAGCTGAATGTTTCAAGATCGATT CTCAGAGTAAGAAGGTTCACTGCCATTCTAATCAGAACGTCGATGGAAATGGGAAGGAAGAATTTGTTGCCGATTATGACTACCTTGTTATTGCAATGGG AGGGCGTCCCAATACTTTCAATACTCCTGGCGTTGTGGAACACTGCAACTTTCTTAAGGAAGTCGAAGATGCTCAGCGGATCCGTAGGTCAGTTGTTGAC TGTTTTGAGAAGGCAAGCCTGCCAAGTCTGAGCGACGAAGAGAGGAAAAAAATCCTCCATTTTGTGGTGGTAGGTGGTGGCCCAACGGGTGTGGAGTTCG CTGCAGAACTCCATGATTTTGTGACTGAAGATTTAGTCAAATTGTACCCAGCAGCGAGGAAGTATGTCAAGATAACACTACTCGAGGCGGCAGATCATAT CCTTACGATGTTTGACAAACGAATTACAGAATTTGCTGAAGATAAGTTCAAAAGAGATGGTATAGATGTCAAATTGGGATCAATGGTCACGAAAGTATCT GATAATGAAATTTCAGCTAAAGCTAGAGTTGATGGCCAAGTTACCAACATGCCGTACGGAATGATCGTCTGGTCAACTGGAATTGGAGCTCATCCGGTCA TAAGGGACTTTATGAAGCAAGTTGGTCAGGAAAATAGACGTGCTTTGGCAACTGATGAATGGCTACGCGTTGAAGGAACTGATAGCATTTATGCCCTGGG TGACTGTGCGACAATCAACCAGCGGAAAGTCATGGAAGATATAGATGCAATATTTAAGAAGGCAGATAAGGACAACTCTGGAACTCTCACTGTAAAGGAA CTTCAAGAAGTAATTGACGATATCTGTGAAAGGTACCCTCAAGTGGGTCTTTATCTGAAGACAAAGAAACTGCGGAATATTGCTGATCTTCTCAGTGATG CCCAAGGGGACGATTCAAAGGGCTCTATTGAACTTAGCATTGAAGAGCTAAAAACTGCCCTCAAGGAAGTTGATTCCCAAGTCAAGAACTTTCCAGCAAC AGCTCAGGTTGCAGCCCAGCAGGGTAGCTACCTTGCCAATTGCTTCAACCGCATGGAAACGGCTGAGAAGAATCCAGAAGGGCCACTGAGGTTCAGAGGA GAGGGCCGCCACCGGTTTCGCCCCTTCAGTTACAAACATTTCGGCCAGTTTGCTCCTCTGGGAGGAGAACAAACAGCAGCCCAACTTCCCGGTGACTGGG TTTCAATTGGTCATAGCTCTCAATGGCTATGGTATTCCGTCTATGCAAGTAAGCTGGTGAGCTGGCGTACGAGAGCATTGGTGATAACTGACTGGATGAA GCGTTTCACCTTCGGAAGGGACTCCAGTTCCATTTGA
AA sequence Show only first row Show all	>Lus10020087 pacid=23156137 polypeptide=Lus10020087 locus=Lus10020087.g ID=Lus10020087.BGIv1.0 annot-version=v1.0 MKAIKLFERASRTYHDSSSLSKLVVVFTVSGGGLVAYADANSLSHVAPPEIKKKRVVVLGTGWAGTSFLKQLNDPSYDVQVISPRNYFAFTPLLPSVTVG TVEPRSIVEPIRNIVKKKNVDVRYWEAECFKIDSQSKKVHCHSNQNVDGNGKEEFVADYDYLVIAMGGRPNTFNTPGVVEHCNFLKEVEDAQRIRRSVVD CFEKASLPSLSDEERKKILHFVVVGGGPTGVEFAAELHDFVTEDLVKLYPAARKYVKITLLEAADHILTMFDKRITEFAEDKFKRDGIDVKLGSMVTKVS DNEISAKARVDGQVTNMPYGMIVWSTGIGAHPVIRDFMKQVGQENRRALATDEWLRVEGTDSIYALGDCATINQRKVMEDIDAIFKKADKDNSGTLTVKE LQEVIDDICERYPQVGLYLKTKKLRNIADLLSDAQGDDSKGSIELSIEELKTALKEVDSQVKNFPATAQVAAQQGSYLANCFNRMETAEKNPEGPLRFRG EGRHRFRPFSYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVITDWMKRFTFGRDSSSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10020087 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	4.9	0.8816
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	5.5	0.8475
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	8.4	0.8185
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	12.2	0.8593
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	13.3	0.8278
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	15.6	0.8110
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	16.1	0.8537
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	18.5	0.8327
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	18.9	0.8110
					Lus10040816 [exp]	20.0	0.8125

Compare expression of checked genes

Lus10020087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.