Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02065 671 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G42520 264 / 1e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 264 / 2e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 257 / 2e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 254 / 3e-78 DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 254 / 2e-77 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G01540 248 / 1e-74 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 244 / 4e-73 DEAD box RNA helicase family protein (.1.2) AT2G33730 234 / 7e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 237 / 3e-68 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006736 [exp] 976 / 0 AT3G02065 686 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10015977 [exp] 261 / 9e-81 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 262 / 4e-80 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 261 / 4e-80 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 258 / 6e-79 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032135 [exp] 255 / 4e-77 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10016207 [exp] 254 / 4e-77 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032133 [exp] 253 / 2e-76 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10037646 [exp] 248 / 5e-76 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140100 [exp] 739 / 0 AT3G02065 681 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G217800 [exp] 265 / 3e-81 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 260 / 2e-79 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 253 / 8e-77 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 250 / 8e-77 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 254 / 8e-76 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 253 / 1e-75 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.006G196000 [exp] 249 / 2e-75 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 249 / 2e-75 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.019G130900 [exp] 241 / 8e-73 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10020088 pacid=23156180 polypeptide=Lus10020088 locus=Lus10020088.g ID=Lus10020088.BGIv1.0 annot-version=v1.0 ATGACAGGAGTTGATGCAGTTGAACGCTCAGTTGAAGATGAATCTGATGAGGTAAAGAAGAGTTCTAGGCAGCAGAGATTAGCTCTGCAAGGGGAACCGA AATGTGTGATATGTGGGCGCTATGGCGAGTACATCTGTGATGAAACCGATGATGACGTATGTAGTTTGGAGTGCAAACAAGTTGTACTAGCCAGAACCAT CGCCAAGGACAGGGGATCTATAAGTAATCGAATCGTGGTTTCTGCAAAGGACGAGTGCTTCTACGTTAGAGATTCCATGTCTTTAACTGCTGATCAGACT GTCACGTCGAGAAAGAAGCTTGACATCCATGTTAAGGGTGATGATACGGTTCCACCTCCCATGCTGTCATTCTCTAGCTGGAATCTTCCATCAAAGCTAC TTCAGAACATAGAATCTGCAGGTTTCGACGTGCCTACACCGGTCCAGATGCAGGCAATTCCGATTGGTTTGAGTGGCAAGAGTCTGTTAGCTTCTGCCGA AACTGGTTCTGGTAAAACCGCTTCCTTTTTGGTTCCTATCATCACTTGTTGTTCGAGACATCAAAATCTGAACCGTAAGAAGCCATTAGGGATTGTTCTA ACGCCGACAAGGGAGCTCTGCATACAAGTTGAGGATCAAGCCAAGTTGCTTGGAAAAGGTTTACTATTCAAGACTGCTCTTGTGGTTGGTGGTGATGCAA TGGCTGGACAAGTTCACCGTCTCCAGCAAGGAGTGGAGCTTATTGTGGCGACCCCAGGAAGGCTCATTGATCTGTTAACAAAGCATGATATTGAACTGGA TGAAGTAAAGATGTTTGTGGTTGATGAAGTTGACTACATGCTCCAGAGTGGCTTTCGTGATCAGGTTATGCAGATTTTCGTGAGTCTCGCTCAACCCCAG GTGTTGATGTATTCAGCGACGATCTCAGAGGAAGTGGAGAAGTTGGCTAGTTCCATGATCAAAGAAATCGTCTCCATTTCCATTGGCCTACGTAACAGGC CAAGCATGGCAGTGAAACAGCTGGCCATTTGGGTTGAAACTAAGCAAAAGAAGCAAAAGCTCTTCGACATACTGTTGAGTAAGCAGCATTTCGTCCCACC AGCCGTTGTATATGTGGGATCAAGACTAGGGGCAGATCTCTTGTCTAATGCAATCACTGTAAGGACTGGTTTGAAGGCTTTATCGATCCACGGCGAGAAG CCGATGAAGGAGAGGAGAGAAATTATGGCAGCATTTTTAATGGGGGAAGCTCCAGTGATTGTCTCAACTGGAGTTTTGGGTCGTGGAATGGATCTGTTGG GTGTGAGACAGGTTATTGTGTTTGACATGCCGAATTCCATTGAGGAGTATGTTCATATGATTGGCAGGGCATCTCGGATGGGAGAAGAAGGCAAAGCCAT AGCCTTCATCAACGAAGAGAATAAGACTATATTCTCTGAGTTTGTGGAGGTATTGAAGTCTTCCGGAGCTGCAATACCCCGAGAACTTTCGAATTCACGA TATACTGCCAAATCCTTGCCTGTTGGGAAGAGTTGGAAGAAGCAGAAGTTCAGTTCATAA
AA sequence Show only first row Show all	>Lus10020088 pacid=23156180 polypeptide=Lus10020088 locus=Lus10020088.g ID=Lus10020088.BGIv1.0 annot-version=v1.0 MTGVDAVERSVEDESDEVKKSSRQQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQVVLARTIAKDRGSISNRIVVSAKDECFYVRDSMSLTADQT VTSRKKLDIHVKGDDTVPPPMLSFSSWNLPSKLLQNIESAGFDVPTPVQMQAIPIGLSGKSLLASAETGSGKTASFLVPIITCCSRHQNLNRKKPLGIVL TPTRELCIQVEDQAKLLGKGLLFKTALVVGGDAMAGQVHRLQQGVELIVATPGRLIDLLTKHDIELDEVKMFVVDEVDYMLQSGFRDQVMQIFVSLAQPQ VLMYSATISEEVEKLASSMIKEIVSISIGLRNRPSMAVKQLAIWVETKQKKQKLFDILLSKQHFVPPAVVYVGSRLGADLLSNAITVRTGLKALSIHGEK PMKERREIMAAFLMGEAPVIVSTGVLGRGMDLLGVRQVIVFDMPNSIEEYVHMIGRASRMGEEGKAIAFINEENKTIFSEFVEVLKSSGAAIPRELSNSR YTAKSLPVGKSWKKQKFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	2.4	0.8891
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	2.4	0.8787
AT5G23490			unknown protein		Lus10019229 [exp]	3.5	0.8748
AT3G20720			unknown protein		Lus10011166 [exp]	4.5	0.8675
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	5.2	0.8773
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10040831 [exp]	6.6	0.8482
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	6.9	0.8481
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	8.8	0.8273
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	9.9	0.8008
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	11.0	0.8574

Compare expression of checked genes

Lus10020088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.