Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61260 94 / 3e-21 Protein of unknown function (DUF761) (.1) AT5G54300 91 / 2e-20 Protein of unknown function (DUF761) (.1) AT1G11220 81 / 6e-17 Protein of unknown function (DUF761) (.1) AT1G11210 56 / 2e-08 Protein of unknown function (DUF761) (.1) AT1G11230 54 / 6e-08 Protein of unknown function (DUF761) (.1), Protein of unknown function (DUF761) (.2) AT4G04990 48 / 6e-06 Protein of unknown function (DUF761) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011239 [exp] 159 / 5e-45 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1) Lus10018444 [exp] 134 / 6e-35 AT5G54300 212 / 6e-65 Protein of unknown function (DUF761) (.1) Lus10006733 [exp] 61 / 8e-10 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10024988 [exp] 42 / 0.0006 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406600 [exp] 136 / 1e-36 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.011G126900 [exp] 115 / 5e-29 AT1G61260 182 / 1e-54 Protein of unknown function (DUF761) (.1) Potri.011G044000 [exp] 114 / 1e-28 AT1G61260 227 / 7e-72 Protein of unknown function (DUF761) (.1) Potri.004G035700 [exp] 97 / 3e-22 AT1G61260 135 / 4e-37 Protein of unknown function (DUF761) (.1) Potri.012G037001 [exp] 63 / 3e-11 AT5G54300 70 / 9e-14 Protein of unknown function (DUF761) (.1) Potri.015G028700 [exp] 57 / 4e-09 AT1G61260 68 / 2e-12 Protein of unknown function (DUF761) (.1) Potri.011G044300 [exp] 45 / 6e-05 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10020090 pacid=23156231 polypeptide=Lus10020090 locus=Lus10020090.g ID=Lus10020090.BGIv1.0 annot-version=v1.0 ATGACGCCGCCGCGTTTTACATTGATCTCCACCGTCGTTTTATCTGCAGCAGCTCTGCTGATCATCATCCTCAACACATCTGCTACAGATTACTTCTCCC CAGTCGTCTACCGAATTCTCGTCCTCTGGGCCTCCTTCTCTTCCACGTGGCTCACGCCTCCTTACCTCTATCTCTTCCTCAACTTCATCATCGTCACCAT CGCCGCCTCATCTCGACTCGAACGCCGGCCGTTGTTGGCTCGAACGTCCGATTCCGATCGTTTCGGTTTTTGTTGTGAGGTTAAGGAGTGGAGGCGACCG TCGCAGGATTCGGGATTCGAGGACAAGTTTGTGGTCTTGAAGTCGTCGGCGTGGGATGATCCGGCCAAGAAGAGGATTGAATCATTGGATAATTATTCGA TGGAATCGAAATGCCTTGTTTCTGCTCGATTCGGAGATCAGAAACCGGTCAAAGTCAGCCTCGAAGGGAGGAGAACAGCCCCAAGTGTGACGAAGCAAAA CAGAAGTGACACACTGGACGACACGTGGAAGAAGATAACGGAAAGCCGTCCAATTCCGTTGAAGAAACACCACAAGAGATCAGACACGTGGCAGAATACT AAGCACGGTATTAGTTATGCAAACGACGCCACGTCAGAATCATCATGCCTTCACTCGACCACTCTTCCGCCGCCGGCCATGAAGAAATCTGCAACGTTTA AGGAAAGGACAGCCAACTTCCGGCTAGCCGGAGATCACCATCAAGTAATCGCATCTAAGCCCATCGATGATGGGCCGACAATGAAGAAGTCGGCCACATT CAAGGACAGGACCGAATTTCAGCTCCGGCGGCTGTCAAACGGAGGAGGAGGGAGGCTAAGGAAGGAGGCGTCGCTGAGTCAGGACGAGTTGAACCACCGA GTGGAGGAGTTCATAAATAAGTTCAACGAGGAGATGAGGATGCAGAGGCAAGAGTCAATTAACCGGTACCATGTTCCACGAGCATGGGTTCATCCTGGCG ACAACCTGCTGGTCCTACGCGAGGAGCTTCGAAACAGTGTTATCACACACAGGGCAGGAGATATGTTCGGTCGTCACAGAGAAGGATCCACCACCACCGG AATCTTGGAGACCGAACATGGGATTCGCATCCCAGAGCCCTGA
AA sequence Show only first row Show all	>Lus10020090 pacid=23156231 polypeptide=Lus10020090 locus=Lus10020090.g ID=Lus10020090.BGIv1.0 annot-version=v1.0 MTPPRFTLISTVVLSAAALLIIILNTSATDYFSPVVYRILVLWASFSSTWLTPPYLYLFLNFIIVTIAASSRLERRPLLARTSDSDRFGFCCEVKEWRRP SQDSGFEDKFVVLKSSAWDDPAKKRIESLDNYSMESKCLVSARFGDQKPVKVSLEGRRTAPSVTKQNRSDTLDDTWKKITESRPIPLKKHHKRSDTWQNT KHGISYANDATSESSCLHSTTLPPPAMKKSATFKERTANFRLAGDHHQVIASKPIDDGPTMKKSATFKDRTEFQLRRLSNGGGGRLRKEASLSQDELNHR VEEFINKFNEEMRMQRQESINRYHVPRAWVHPGDNLLVLREELRNSVITHRAGDMFGRHREGSTTTGILETEHGIRIPEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	0	1
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	1.0	0.9284
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	1.4	0.8868
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043406 [exp]	5.7	0.8746
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	7.3	0.8832
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	7.9	0.8764
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10009969 [exp]	8.5	0.8858
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	14.3	0.8844
					Lus10019691 [exp]	21.9	0.8403
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	24.1	0.8836
					Lus10020249 [exp]	25.7	0.8616

Compare expression of checked genes

Lus10020090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.