Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80450 45 / 6e-06 VQ motif-containing protein (.1) AT5G08480 45 / 8e-06 VQ motif-containing protein (.1.2) AT1G28280 40 / 0.0005 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026897 [exp] 198 / 9e-65 AT1G80450 67 / 4e-14 VQ motif-containing protein (.1) Lus10026247 [exp] 137 / 8e-41 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10042423 [exp] 135 / 6e-40 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266700 [exp] 79 / 1e-18 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.006G266600 [exp] 78 / 3e-18 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1) Potri.018G016500 [exp] 76 / 3e-17 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1) Potri.011G053700 [exp] 42 / 9e-05 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G134200 [exp] 40 / 0.0004 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10020092 pacid=23142043 polypeptide=Lus10020092 locus=Lus10020092.g ID=Lus10020092.BGIv1.0 annot-version=v1.0 ATGGGTACTCGCCGCCACGGGGTCACAAATTCCAATTCGCTACCGCCGATGTCTCCAGTCTCAACGACGACGTTCGTCCAAGCCGACGCCGCCACTTTCC GGGAGCTCGTCCAGAAGCTCACCGGAGTAGCGGCCGACTCCGACGCCAAGCTTCCGGTGACTCACCCTTCAAGGACTCATCATCATGCTGCAAGACCCAC CAATTATAATCTCATCAACAACATCAATTCGCCTCGCCGGTCGCCGTACAAGCTTCAGGAACGGCGGCAGACGGTAAGAAAGCTGGAGATCAAGCTGAGC CGAGCGAGTCTCCGTAGCAGCAATAGCCCCTGTTCTTCCCCTTATTACTCTCCCGTTGCTAGCCCAGTGACGCCGCTAATGATGGGTTCGCCGTTTTTCT CGAGCAGTGCGGAGACGTCGCCGTCGCCGTCGACGGAGGAGGAGAGGGCAATAGCGGATAAGAGGTTTTATTTGCACCCGTCTCCTCGGTTGAGTACGCC ACGGAGGGGGAATGTGGACCCCCCGGAACTGCTTCCCCTGTTTCCTCTGACTTCCCCTTCCACCGTGAATTGA
AA sequence Show only first row Show all	>Lus10020092 pacid=23142043 polypeptide=Lus10020092 locus=Lus10020092.g ID=Lus10020092.BGIv1.0 annot-version=v1.0 MGTRRHGVTNSNSLPPMSPVSTTTFVQADAATFRELVQKLTGVAADSDAKLPVTHPSRTHHHAARPTNYNLINNINSPRRSPYKLQERRQTVRKLEIKLS RASLRSSNSPCSSPYYSPVASPVTPLMMGSPFFSSSAETSPSPSTEEERAIADKRFYLHPSPRLSTPRRGNVDPPELLPLFPLTSPSTVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80450			VQ motif-containing protein (....		Lus10020092 [exp]	0	1
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	13.0	0.7125
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	15.9	0.6867
					Lus10008536 [exp]	24.7	0.6559
AT3G12960			unknown protein		Lus10011871 [exp]	30.5	0.6632
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009672 [exp]	36.2	0.6369
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	37.3	0.6328
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	39.1	0.6573
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	46.1	0.6176
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	54.8	0.6545
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	79.2	0.5749

Compare expression of checked genes

Lus10020092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.