Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24860 57 / 3e-10 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042590 [exp] 138 / 1e-40 ND / Lus10043082 [exp] 132 / 2e-38 ND / Lus10014685 [exp] 122 / 2e-33 AT4G04614 64 / 2e-16 unknown protein Lus10032910 [exp] 112 / 3e-30 ND / Lus10025417 [exp] 110 / 1e-29 ND / Lus10026899 [exp] 107 / 3e-29 AT2G24860 154 / 6e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10006395 [exp] 108 / 9e-29 ND / Lus10033051 [exp] 96 / 8e-24 ND / Lus10015895 [exp] 84 / 5e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266800 [exp] 66 / 2e-13 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 64 / 7e-13 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020093 pacid=23142022 polypeptide=Lus10020093 locus=Lus10020093.g ID=Lus10020093.BGIv1.0 annot-version=v1.0 ATGTCGAAGACCAAGAAGTGTGATTTCCCCTTCAAAGTGGCATTGAGGTACCGTGTGGTAGAAGGCGAGTGGAAGTTCTGGATTGACGGGGTAGGCCACA CCAACAATCCTGCACAACCAAAAGGATACAACAATCATTTTTTCTTGCCATATCCTGAAGTTAGCACAGAAACCAATGCCCTTATAAGTGAAGAGAAGAG CAATAGTAGGGACATGGTTGCAACTCATATACAACCGGATAAGATCAGGTATGCTCTGAACAAAAAGTTCACCACTCATCGGGTGGGTTTCCAGCCTAAA CCGAAAACTATCGAAGAAGAAGAAGAAGATATGAGTATGTCGAGTTGCTTCTGTTGCGGTAGTGTCATGCCGGTGATTGGGACTAAATCGCCGACCACCA CGACTATATCTACACGTTCTTCTGCCGGTAAATCGCCAATTCACCCACTTGGTACTGTGGCCGGGACGGTTTCATGTAGGGTTCCAATAGTCAGGGCTTC TGCCGTGGATTCGTATGGGAACTCCTCTGATTTCACTAAACGTATGGAGCAGGCTTGGTCAATATCTAAGCTAGCACAAACTACCAGAACTGATGTAAGC CTTGTGAACGATATCGTGATATTTCAGGGGTCCATGCGTTGCGGTGAGTGCAAGGGAACCGGGTTTCGTGCCAAGTGGTTGGGCAAATCAGAACCCCCAG GTTCTACCTGA
AA sequence Show only first row Show all	>Lus10020093 pacid=23142022 polypeptide=Lus10020093 locus=Lus10020093.g ID=Lus10020093.BGIv1.0 annot-version=v1.0 MSKTKKCDFPFKVALRYRVVEGEWKFWIDGVGHTNNPAQPKGYNNHFFLPYPEVSTETNALISEEKSNSRDMVATHIQPDKIRYALNKKFTTHRVGFQPK PKTIEEEEEDMSMSSCFCCGSVMPVIGTKSPTTTTISTRSSAGKSPIHPLGTVAGTVSCRVPIVRASAVDSYGNSSDFTKRMEQAWSISKLAQTTRTDVS LVNDIVIFQGSMRCGECKGTGFRAKWLGKSEPPGST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	3.2	0.8303
AT1G70420			Protein of unknown function (D...		Lus10030876 [exp]	17.2	0.8217
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	21.7	0.8196
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10017376 [exp]	22.5	0.8405
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10005483 [exp]	23.2	0.7460
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	38.2	0.8244
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	58.6	0.7763
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	94.7	0.7919
AT5G42965			Polynucleotidyl transferase, r...		Lus10001374 [exp]	97.9	0.7647
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	108.7	0.7947

Compare expression of checked genes

Lus10020093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.