Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24970 180 / 5e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026900 [exp] 271 / 8e-95 AT2G24970 149 / 2e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016300 [exp] 214 / 2e-72 AT2G24970 197 / 1e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020094 pacid=23141976 polypeptide=Lus10020094 locus=Lus10020094.g ID=Lus10020094.BGIv1.0 annot-version=v1.0 ATGGGGCATCGTCACCATCATGAGCATAACCAAGCGGCAGACGGCCTGGTCAATCTGTTGACGAAAGCTCACCATGATCTCGCAGCTGTTCAATCTAAGC TCGAGAAGGAGTTTCAACGGACTTATCCAGACAATGCAAATCCGGTAAAGCTGGTTAACAGGATAAAGAAGGTACAAGACGAAGTTACAGAGTTAATGGA TCGGTGCCGTGAGCTACTTGCTGCGAAGCAGGATTTGATTGATAAAGCTCGTGCAACTCTTTTGGGGAGCAACAATGTCATAAATCGGATGCAAGTATCA ACTGGTATCCCTCCTACAAATGTCGAAGAGGATTCTGCATTTACCGACTTCAATCAGGTAATTGATGAGTGGAAGACTCAAGTACGATCAAGAACTGGAA ATGAATTACAGGACACGGATGGTCAGGACATCAACAAATTGCTCTTCTCAGCCATTGTGCAAAGCAACGACTAA
AA sequence Show only first row Show all	>Lus10020094 pacid=23141976 polypeptide=Lus10020094 locus=Lus10020094.g ID=Lus10020094.BGIv1.0 annot-version=v1.0 MGHRHHHEHNQAADGLVNLLTKAHHDLAAVQSKLEKEFQRTYPDNANPVKLVNRIKKVQDEVTELMDRCRELLAAKQDLIDKARATLLGSNNVINRMQVS TGIPPTNVEEDSAFTDFNQVIDEWKTQVRSRTGNELQDTDGQDINKLLFSAIVQSND

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24970			unknown protein		Lus10020094 [exp]	0	1
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10012954 [exp]	2.6	0.8568
AT3G53730			Histone superfamily protein (....		Lus10040849 [exp]	2.6	0.8999
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	4.5	0.8912
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	7.1	0.8848
AT1G61000			unknown protein		Lus10012690 [exp]	11.6	0.8471
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	13.8	0.8650
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	17.9	0.8504
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10026192 [exp]	19.2	0.8120
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	20.3	0.8274
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	21.9	0.8664

Compare expression of checked genes

Lus10020094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.