Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24830 426 / 7e-145 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT3G09850 49 / 1e-05 D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026901 [exp] 818 / 0 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 55 / 1e-07 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10036327 [exp] 53 / 6e-07 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10002252 [exp] 49 / 7e-06 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 49 / 9e-06 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016200 [exp] 493 / 4e-171 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 56 / 7e-08 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.018G113600 [exp] 56 / 8e-08 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 46 / 7e-05 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10020095 pacid=23142024 polypeptide=Lus10020095 locus=Lus10020095.g ID=Lus10020095.BGIv1.0 annot-version=v1.0 ATGGCGAACGAAGACGAAGAGAAAGCTCTGGAGAATCAGCTAGAAGAGCAGTTACATGAACTGAGAGACTCCCTTGCCGATCTTGAAGACGCTCTTTCTT CTGATTCTTCCAATTCTGAGCTGCTCTCTGTTCAGGAGGAGCTTGTTCAGTCGATCAAAGAAGCGGAGGATGGGCTTCTTCACCTTAAACGTGCTCGGTT GTTAAGGCAAGTGGATGTAACAGCAGCAGCACTTCGGAGCTCCAGTCGAATTCCCAACGATGTTGAAGTGGTGCATATTGACGATACAGACGGTGAAGCA GCAACACTTCAGAGTTCCAATCCGATCGGGGGTAATGTTGAAGTAGTGCATATTGACGATACAGATGGAGAAGCAGAACCAGTAGAGAAGGACACAGATG GATTTTCTGTTGGATCCAAGTGTAGGTTCCGTTCTGCTGATGGGCGGTGGTATAGCGGAAAGATCATAGGGTTTGAAGGTTCTGACGCTGCGAAGATATC TTTCCTCACACCTACTTCGGATAACATGCTGATGTGCAAGTTTTTCCGGCAACAAAGATGTCGATTTGGTACTGTTTGCCGCATGTCCCATGGGGTTGAT GTGCCACTGTCTTCCCTGAGGGAGTATGTTCCAACAGTCTGGGATCAGTCATTTGTGGGGTCCAGCATTTTTGCAATAACTAACCGAAGTGTTGGTATTT GGAGAGAAGCAGAGCTCCAATCTTGGGATAATGAACTCGGGATGGGAAAGGTTGTTTTCCGTGATGATGGGAGCTCTGCTAAGCTTCAGCCTGAAGATAT GTCATTATCTGATTATGGACTAGTCAGCGAGGAAGAAGATGGTGATGATACAAGCTCAGAACAATCCGATTCAAGTGATCGTGAAGAAGAAGAAGAAGAA AGCCCCGGAGGCTTGGGATTTCTTGGGAGCACCAACCAACAAAGAGGCATCCAAAAGGAAACTGCGATATTTGCGAAGTGGGAGAATCACACCAGGGGTA TAGCTTCCAAGATGATGGCAAATATGGGTTACCGCGAAGGAATGGGTTTAGGAGCATCGGGGCAAGGAATGGTGAATCCGATTCCCGTGAAGGTCCTTCC GGCTAAGCAGTCACTTGATCATGCTTTAGAATCTCAAAGAGGAGGTGAAGAGAGCAACAAGGGAAGTCGTGGAAAGAAGCGAAGCAGAGGTGGGAAGAGA AAACGTGAAAAGAAGTTTGCTGAGGCAGCTAGGGCAGCAAAGGCCTTGGCGAAGAATCAAGAAGAAACTAGACCAGACGTCTTCAGCTTCATTAACAACC AACTCGCGATGAATGGTGTGTCGGCCAAGAAGGAACAAAGAAAAGGTTCAGGGGAGAAAAAAATGGACAGACGAGCTCTGGTTGCTCATGAAGACGAGAT GAATGATTTGAGAATACAAGTAGAACGGCTGGAGGAGATGGCAAATAGAAACAGGAAGGAGAAGTTAGTTTATGAAGCCACCATTAGGAGGTTAAACGAA GCTCGGAAAGCCTTGGAAGACGCTCAGGCTACTCATGCTTCTGCCACTTTTGCCATTGTTAGCAAAGAGCAAGAGAAGAAATGGCTCAAGTTTTGA
AA sequence Show only first row Show all	>Lus10020095 pacid=23142024 polypeptide=Lus10020095 locus=Lus10020095.g ID=Lus10020095.BGIv1.0 annot-version=v1.0 MANEDEEKALENQLEEQLHELRDSLADLEDALSSDSSNSELLSVQEELVQSIKEAEDGLLHLKRARLLRQVDVTAAALRSSSRIPNDVEVVHIDDTDGEA ATLQSSNPIGGNVEVVHIDDTDGEAEPVEKDTDGFSVGSKCRFRSADGRWYSGKIIGFEGSDAAKISFLTPTSDNMLMCKFFRQQRCRFGTVCRMSHGVD VPLSSLREYVPTVWDQSFVGSSIFAITNRSVGIWREAELQSWDNELGMGKVVFRDDGSSAKLQPEDMSLSDYGLVSEEEDGDDTSSEQSDSSDREEEEEE SPGGLGFLGSTNQQRGIQKETAIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMVNPIPVKVLPAKQSLDHALESQRGGEESNKGSRGKKRSRGGKR KREKKFAEAARAAKALAKNQEETRPDVFSFINNQLAMNGVSAKKEQRKGSGEKKMDRRALVAHEDEMNDLRIQVERLEEMANRNRKEKLVYEATIRRLNE ARKALEDAQATHASATFAIVSKEQEKKWLKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10020095 [exp]	0	1
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	9.4	0.8963
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	9.8	0.9071
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	18.2	0.8929
AT5G09390			CD2-binding protein-related (....		Lus10015844 [exp]	20.0	0.8559
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	25.0	0.8946
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10024560 [exp]	29.2	0.8406
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	32.3	0.8834
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	34.9	0.8909
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026908 [exp]	52.2	0.8825
AT5G26770			unknown protein		Lus10001515 [exp]	55.9	0.8779

Compare expression of checked genes

Lus10020095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.