Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31770 561 / 0 ATDBR1 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026902 [exp] 810 / 0 AT4G31770 551 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015300 [exp] 629 / 0 AT4G31770 546 / 0.0 ARABIDOPSIS THALIANA DEBRANCHING ENZYME 1, debranching enzyme 1 (.1) Potri.006G152100 [exp] 42 / 0.001 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase CL0163 [flax] [poplar] PF05011 [flax] [poplar] DBR1 Lariat debranching enzyme, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020096 pacid=23142086 polypeptide=Lus10020096 locus=Lus10020096.g ID=Lus10020096.BGIv1.0 annot-version=v1.0 ATGAAGGTAGCCGTGGAAGGCTGTATGCATGGTGATCTTGAAACAGTTTACCAGACACTCCAGCACCTCGAGAAGTTGCACGATACCAAAATCGACCTTC TCCTTTGCTGCGGCGATTTTCAGGCGGTGAGGAACGAGAGAGATCTTCAGAGCCTGAATGTACCGCCCAAATATCGAGAGATGAAGTCTTTCTGGAAGTA CTACTCCGGCCAGGAGGTCGCTCCCATTCCTACGATTTTCATCGGTGGAAATCATGAAGCTTCCAATTACTTGTGGGAACTATACTATGGGGGATGGGCA GCTCCTAACATTTTCTTTATGGGCTTTGCTGGAGTGGTCAAGTTTGGTAACATTCGTATAGGTGGCCTTTCTGGGATTTACAATGCCAGGGACTATCATA GAGGGCATGATGAGAGACCACCGTATAATGAAAATTCTATAAGATCCATTTACCATGTTCGTGAATACGATGTACATAAACTCATGCAAGTAGAAGAACC CATTGACATCTTCCTTTCACACGATTGGCCTCTTGGCATCACTGATTGCGGTGATTGGCAGCAACTTGTTCGTTTCAAACCGTTCTTTGAAGCAGAGATA AAGGAAAGGACCCTTGGAAGCAAAGCTGCTGCTCAGCTATTAGAAAAGTTGAGGCCCCCCTATTGGTTTTCAGCTCACTTACACTGCAAATTTGCTGCCC TTGTCAATCATGGGTCAAGTGGCCAGACAACGAAATTTCTTGCACTCGATAAATGTCTACCAAAGAGAAGGTTCTTACAGATTATTGACATAGAGTCAAA TCCAGGACCTTTTGAGATCCAGTACGATGAGGAATGGCTAGCAATAACCAGGAAATTTAACTCTATTTTTCCATTGACATATAAAAATCCTAACTTTAGG GATACGACGTTGGAGCTCCAAGATTGTCGTGAACTGGTCAAGAACAAACTACAAGCTAGAGGAGCTAAACCGTTTGAATTTGCACGTACTGTTCCTGCTT TTGATCCCAGTCAATCTAAAGTAAAGGGCTCCCCTGGTAGTGATGATTGTCCTAGGAATCCCCAGACAGAGTCCTTCCTGCAGCTTTTGGAGCTACCATA TCTGCTAGACAGTGGATACATACATAAAGGAAGCGTTAATGATGACAAAACTGGTGTAGTGATCCGTAAAGGTCCTTACGGTGATGATCCTGAAGTGATA CCTCTAGATGATGTTGATGATACAGATGAAGAGTCCGAGAAGGATGACCCAGAAGCTTCAGATGAATAG
AA sequence Show only first row Show all	>Lus10020096 pacid=23142086 polypeptide=Lus10020096 locus=Lus10020096.g ID=Lus10020096.BGIv1.0 annot-version=v1.0 MKVAVEGCMHGDLETVYQTLQHLEKLHDTKIDLLLCCGDFQAVRNERDLQSLNVPPKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWA APNIFFMGFAGVVKFGNIRIGGLSGIYNARDYHRGHDERPPYNENSIRSIYHVREYDVHKLMQVEEPIDIFLSHDWPLGITDCGDWQQLVRFKPFFEAEI KERTLGSKAAAQLLEKLRPPYWFSAHLHCKFAALVNHGSSGQTTKFLALDKCLPKRRFLQIIDIESNPGPFEIQYDEEWLAITRKFNSIFPLTYKNPNFR DTTLELQDCRELVKNKLQARGAKPFEFARTVPAFDPSQSKVKGSPGSDDCPRNPQTESFLQLLELPYLLDSGYIHKGSVNDDKTGVVIRKGPYGDDPEVI PLDDVDDTDEESEKDDPEASDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	0	1
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	4.5	0.8240
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	9.4	0.7509
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	17.3	0.7752
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	18.0	0.7665
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	19.6	0.7725
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	21.5	0.7404
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	21.7	0.8149
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	25.1	0.7223
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10026747 [exp]	26.1	0.7245
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	27.3	0.7767

Compare expression of checked genes

Lus10020096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.