Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24800 413 / 3e-145 Peroxidase superfamily protein (.1) AT4G31760 399 / 1e-139 Peroxidase superfamily protein (.1) AT5G51890 250 / 2e-81 Peroxidase superfamily protein (.1) AT1G05260 245 / 2e-79 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G14130 240 / 2e-77 Peroxidase superfamily protein (.1) AT3G21770 236 / 7e-76 Peroxidase superfamily protein (.1) AT5G42180 235 / 1e-75 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT1G77100 234 / 3e-75 Peroxidase superfamily protein (.1) AT5G64120 234 / 4e-75 Peroxidase superfamily protein (.1) AT4G11290 233 / 1e-74 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026903 [exp] 618 / 0 AT2G24800 418 / 2e-147 Peroxidase superfamily protein (.1) Lus10005614 [exp] 248 / 9e-81 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 248 / 2e-80 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10027405 [exp] 243 / 8e-79 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10032926 [exp] 243 / 1e-78 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031664 [exp] 243 / 2e-78 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10034547 [exp] 239 / 6e-77 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10042144 [exp] 238 / 1e-76 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10015127 [exp] 238 / 1e-76 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015500 [exp] 463 / 6e-165 AT2G24800 416 / 2e-146 Peroxidase superfamily protein (.1) Potri.006G267400 [exp] 454 / 3e-161 AT2G24800 409 / 1e-143 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 244 / 4e-79 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 239 / 4e-77 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G042800 [exp] 238 / 8e-77 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 238 / 9e-77 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 236 / 8e-76 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.017G038100 [exp] 235 / 1e-75 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 234 / 4e-75 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 233 / 1e-74 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020097 pacid=23142012 polypeptide=Lus10020097 locus=Lus10020097.g ID=Lus10020097.BGIv1.0 annot-version=v1.0 ATGGATTCTTCATCAACCTCACCGGTCCCATTTCTGCTCCTTATTCTCATTCTCCCCAACTGTTCTTCTGCGACACTGTCCTTCGACTTCTACTCATCCT CCTGCCCTGCCGTCGACATGATTGTATCCAACACAGTCAGGACAGCTTCCTCCGACGACCCATCTATCCCCGGGAAGCTCCTCCGCTTGCTCTTCCACGA CTGCTTTGTTGACGGTTGCGATGGATCTGTGCTTCTGGAAGGGAACTCGACGGAGAGGAGTGACCCGGCTAACGGGTCGCTCGGAGGGTTCGAAGTGATC GATTCGGCGAAGAGGGTGCTGGAGGTGTTCTGCCCTGGCATTGTATCTTGTGCTGATATTCTGGCTCTGGCTGCCAGAGATGCGGTTGTAATCTCTGGAG GACCGAATACTCAAATTCCGACTGGGAGAAGAGATGGTTTGGTTTCCTCGGTGTTGAATGTTAGACCAAACATTGTGGACACTAGCTTCACCATGCCTGA AATGGTCAAGATTTTCTCCTCCAAAGGTCTCTCTCTTGATGACCTCGTCATTTTATCTGGAGCTCACACAATAGGATCAGCCCATTGCGGAGCATTCATC GACCGGTTCCACAAAGATCCCAAAGGGAAACTGAATGGGATCGACTCCTCATTGGACGCTAACTACGCAAAGGACTTGATCCAGAAATGCCCAGCCGGAG CCAATAACCCATCACTAAAGGTTGCGAATGACCCCGAAACCTCGTCGGTGTTCGACAACCAGTATTACAGGAACCTGTTGGGACACAAGGGTCTTTTCCA GTCAGATTCAGTGCTGTTGGAGGACAAACAGGCGAGTAAGTTGGTGCGAGATTTGGCAGCAGACGAGGAGGCGTTTTTCGAGAGGTGGAGCGAGTCGTTT GTGAAGCTTACTAGTGTCGGTGTGAAGACCGGCGAGGAAGAAGGAGAAATTCGAGCTTCTTGTTCCGTTACTAATAGTAATATGAATAAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10020097 pacid=23142012 polypeptide=Lus10020097 locus=Lus10020097.g ID=Lus10020097.BGIv1.0 annot-version=v1.0 MDSSSTSPVPFLLLILILPNCSSATLSFDFYSSSCPAVDMIVSNTVRTASSDDPSIPGKLLRLLFHDCFVDGCDGSVLLEGNSTERSDPANGSLGGFEVI DSAKRVLEVFCPGIVSCADILALAARDAVVISGGPNTQIPTGRRDGLVSSVLNVRPNIVDTSFTMPEMVKIFSSKGLSLDDLVILSGAHTIGSAHCGAFI DRFHKDPKGKLNGIDSSLDANYAKDLIQKCPAGANNPSLKVANDPETSSVFDNQYYRNLLGHKGLFQSDSVLLEDKQASKLVRDLAADEEAFFERWSESF VKLTSVGVKTGEEEGEIRASCSVTNSNMNKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24800			Peroxidase superfamily protein...		Lus10020097 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	2.2	0.9556
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	5.7	0.9242
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	8.0	0.8840
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	8.1	0.9237
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10035467 [exp]	9.9	0.9048
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	10.2	0.9143
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	10.2	0.9041
					Lus10033439 [exp]	10.8	0.8470
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	12.0	0.9215
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	13.2	0.9062

Compare expression of checked genes

Lus10020097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.