Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 176 / 9e-51 Eukaryotic aspartyl protease family protein (.1) AT5G10760 169 / 5e-48 Eukaryotic aspartyl protease family protein (.1) AT1G79720 129 / 3e-33 Eukaryotic aspartyl protease family protein (.1) AT1G01300 117 / 8e-29 Eukaryotic aspartyl protease family protein (.1) AT3G61820 114 / 9e-28 Eukaryotic aspartyl protease family protein (.1) AT1G25510 108 / 6e-26 Eukaryotic aspartyl protease family protein (.1) AT1G09750 106 / 2e-25 Eukaryotic aspartyl protease family protein (.1) AT5G33340 106 / 3e-25 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT3G20015 104 / 2e-24 Eukaryotic aspartyl protease family protein (.1) AT2G03200 104 / 2e-24 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026906 [exp] 672 / 0 AT5G10760 182 / 9e-53 Eukaryotic aspartyl protease family protein (.1) Lus10000265 [exp] 186 / 4e-55 AT5G10770 173 / 3e-49 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 180 / 5e-52 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020099 [exp] 170 / 8e-49 AT5G10770 149 / 4e-40 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 152 / 2e-41 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 152 / 3e-41 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 139 / 1e-36 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 109 / 4e-26 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 107 / 2e-25 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232600 [exp] 186 / 3e-54 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 177 / 4e-51 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 171 / 6e-49 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 169 / 5e-48 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 169 / 7e-48 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 168 / 1e-47 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 167 / 2e-47 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 167 / 4e-47 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 164 / 3e-46 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 163 / 1e-44 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10020100 pacid=23142039 polypeptide=Lus10020100 locus=Lus10020100.g ID=Lus10020100.BGIv1.0 annot-version=v1.0 ATGATTACACTTGCGTCGTCATACGTTGTGATCAGCGCTGATGCCGCCGGGATTTTAAAGCAGGAATCACCAATTCATACTGATGAATTCGGGTTAGGAA CCACCCTGACTCTCACACCGGACCAAGGATCCTTCGTCATCACTGTAGGAATCGGCACTCCGAGACACGATTTCGACTTGCTCTTCGACACCGGCAGCGA CACCAGTTGGGTCAAATGCAACTCTTCCGACGACGTTTCTTTCAACCCTTCTCTGTCATCAACCTCGTCCTCCGTCTCCTGCGGCACTAACTGCAATTAC TCCGTAGACTACCACGATGGCTCGCAATCTTCCGGAGTTTACGCAAACGACACGCTTTCATTGGACGCCTTGGTTAACAAAGGATTCATCTTCGGTTGCG CTGAAAAATCCGTTGGGGAGTTCGGTCGAGCAGTTGGCGTGCTTGGTCTAGGACATGGCTATTTCTCCCTGTTAGCACAAACGGATTCGACTCTGCTCGG CTTCTTCTGCTACTGCCTTCCCCTCACCGATTCCTCAACCGGATCGCTATGGTTCGGCGTCCAGGCGATGGAGACCTGCCGTCCGAAATCACCGTCCGCC AAGATGATCTCGCTTGATATTCATCCCAACAACAACAATGGCCTCACAAACTACTTCGTAAAATTCACCGGGATAACAATCGGACGGCAGAGATTGGACT TCGCGTCCTTGTTACCACCATCTGCTTCCTCCCAAATGAACACGATCATCGATTCCGGAACGATTGTGACCCGCCTTCCTATGGCCGTGTATACGGAGCT CCGGGCGACGTTTCAGGGATTGATGTCTGGTTATGTTGAAGCAGAAGGGAGTAAGCTGTTGGATAGTTGTTATAACCTGGAAGGAGAGGAGAGCGAGTGG AGCCCGCCGGAGATGATGCTACACTTTGAGGATTCGGTGGATGTGAAGTTGGATCCGTCGGCGGTGATATTGAAGGAAGGAGAAGAGAATCCAATGTCTC GAGTGTGCTTGGCATTTGCCGGCAATGGGAATGAGGGGGATTTGACTATTATTGGGAACCAACAGCACCGAGGGTTGAAAGTTTACTATGACATCAATGG CAAGAGATTGGCATTCAACTCCGGTGGCTGCAGCTCATTTTGA
AA sequence Show only first row Show all	>Lus10020100 pacid=23142039 polypeptide=Lus10020100 locus=Lus10020100.g ID=Lus10020100.BGIv1.0 annot-version=v1.0 MITLASSYVVISADAAGILKQESPIHTDEFGLGTTLTLTPDQGSFVITVGIGTPRHDFDLLFDTGSDTSWVKCNSSDDVSFNPSLSSTSSSVSCGTNCNY SVDYHDGSQSSGVYANDTLSLDALVNKGFIFGCAEKSVGEFGRAVGVLGLGHGYFSLLAQTDSTLLGFFCYCLPLTDSSTGSLWFGVQAMETCRPKSPSA KMISLDIHPNNNNGLTNYFVKFTGITIGRQRLDFASLLPPSASSQMNTIIDSGTIVTRLPMAVYTELRATFQGLMSGYVEAEGSKLLDSCYNLEGEESEW SPPEMMLHFEDSVDVKLDPSAVILKEGEENPMSRVCLAFAGNGNEGDLTIIGNQQHRGLKVYYDINGKRLAFNSGGCSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	0	1
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	1.7	0.9264
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	3.6	0.8937
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	4.5	0.9222
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	5.0	0.9147
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	5.5	0.9071
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	5.7	0.9195
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	7.2	0.9163
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	7.3	0.9144
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	7.5	0.8861
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	7.5	0.9115

Compare expression of checked genes

Lus10020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.