Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 357 / 3e-116 Major facilitator superfamily protein (.1) AT3G16180 349 / 2e-113 Major facilitator superfamily protein (.1) AT1G69870 280 / 2e-86 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 255 / 2e-77 NRT1.6 nitrate transporter 1.6 (.1) AT1G18880 244 / 2e-73 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 242 / 3e-72 Major facilitator superfamily protein (.1) AT5G62680 235 / 2e-69 Major facilitator superfamily protein (.1) AT5G11570 228 / 3e-68 Major facilitator superfamily protein (.1) AT5G28470 220 / 1e-64 Major facilitator superfamily protein (.1) AT1G68570 220 / 2e-64 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008539 [exp] 676 / 0 AT1G52190 371 / 8e-122 Major facilitator superfamily protein (.1) Lus10023663 [exp] 415 / 5e-139 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 369 / 1e-120 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 344 / 7e-111 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 275 / 1e-84 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 275 / 2e-84 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 267 / 8e-82 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037896 [exp] 263 / 4e-80 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10036669 [exp] 251 / 2e-75 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087500 [exp] 379 / 5e-125 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 375 / 1e-123 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 327 / 2e-105 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 308 / 1e-97 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 307 / 2e-97 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 304 / 2e-96 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 303 / 7e-96 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 297 / 2e-93 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 295 / 9e-93 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 289 / 2e-90 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10020101 pacid=23141968 polypeptide=Lus10020101 locus=Lus10020101.g ID=Lus10020101.BGIv1.0 annot-version=v1.0 ATGGCTGTAGTAGATGTTTCACTAGGCGGTTGGAAGACGCTACCTTTCATCATAGCAAATGAGATTTTTGAGAAGGCGGCTAGTGTCGGGCTAATACCGG TGTGTATCGAGTACCTTACGAATGACTACTTCATCGGCCTCTCGGGTGTCTCCACCTTTGTGCTAGTATTCGGTGCTGTCAGGAACTTCACTCCGATTTT CGGAGCCGGTGTCTCGAACTCCTATGGCCAATTCAAGGTCATTGCCTTTGGCAGCTTGGTCACACTAATGGGCATGGCGATTTTATGGGCCACAGCATTC TTCCCCGGACTACGACCTGATGCCCCAGACAGTCCGTTTGGGGAGAAACTGTGGAGGTTGCTCCTACTCTTCTCCTCTTTCGCTATTATGGCAATCGGAG GCGGCGGGATAAGGCCGTGTTGTCCCACGTTCGGGGCGAACCAGATTAACAACCCCAACGACCCCGACAATAGGAAAACCATCGAAGGGTACTACAGCTT GTACTATGCCACGGTGGGGTTCTCGGTCGTGGTTTCGGTGCTGGTCATGTCCGAAATCAACAAGCATGTGGAGTGGTCTATGTTGTTCGCTATCCCTCCC GTCCTCATGCTGCTCTCCTTCATCTCTTTCATGGTTAGATCCTCTCGATACGTTAAGGTTGTCCAGATATCAAAGTCTAGTTCGAGGAGTGGTATCGGGA CATTGCTCATGGCAGCATGGAGACGAAGACGACTGTCAGTAGCCCCTTCCGATACCGACCAAGCTAGGTGGTTCCACTACGGTCGATCCACCTTCGTCCA TCCCACCAATCGATTAAGATTTCTCAACCGAGCTTGCATGCTCATTGACAATGAAGAGGCTACAAACCCTAACACTTCTTTATCTACTGTTCGAGAGGTG GAGGAGTTCAAAGCTCTCATCTCCGTCATCCCCATCTGGTCTACCGGAATCATCACCACCGTGGCCACTTCTCCGGGCGCCTTGCCCAACTACCAAGCCC AAGCCATGGACCGCCACTTGGGCCATCTAAACCTCACCCCTGCAGACTACGTCATCTTCACTGTTGGCACAATGACCCTATGGATGCTCTTATATGCCAG GGTCATCGTCCCGGCCCTCACTAGGTTCAACTCTAAGCACCTCCGAAACGGCATCCAGCCTCGGATCCGAATGGCCATAGGAATCGCCTTGTCATGCATC GCCAACCTCATTGCAGGTTTCGTGGAACACCATCGACGGTTGGTTTCGAGGGGGCCGACCATGTCGGGGAACTGGCTTATCCCCCAGCTTTCACTGATGG GACTTGCGGAGGCGCTCTACCTGCTTGCGCAACTCGACTTCTTCAATTCACGGTTGCCGAATGGGATGAAGAGCCTTGGGAATGCTTTAGTATCCTTGGG GCAGTGTTTCGGGATGCTAGCTGCGACGTTGATGTTGCGCCAAGTGAAGAATCACACTGGGTGGGTAAATGATAATCTATCCCGCAGTAAAATCGACTAC TACTATTGGCTTGTGGCAGGGCTGAGTTTCTTCAACTTGTGCTACTTCTTGGTCTGCACTTGGGCGTATGGTAATCACCATACTATATCTTGGGATGATG ATCAGCTGGAAGCCAGTGATGGCGTCGAAGTGTTGAAAGTTGAAGTTTGA
AA sequence Show only first row Show all	>Lus10020101 pacid=23141968 polypeptide=Lus10020101 locus=Lus10020101.g ID=Lus10020101.BGIv1.0 annot-version=v1.0 MAVVDVSLGGWKTLPFIIANEIFEKAASVGLIPVCIEYLTNDYFIGLSGVSTFVLVFGAVRNFTPIFGAGVSNSYGQFKVIAFGSLVTLMGMAILWATAF FPGLRPDAPDSPFGEKLWRLLLLFSSFAIMAIGGGGIRPCCPTFGANQINNPNDPDNRKTIEGYYSLYYATVGFSVVVSVLVMSEINKHVEWSMLFAIPP VLMLLSFISFMVRSSRYVKVVQISKSSSRSGIGTLLMAAWRRRRLSVAPSDTDQARWFHYGRSTFVHPTNRLRFLNRACMLIDNEEATNPNTSLSTVREV EEFKALISVIPIWSTGIITTVATSPGALPNYQAQAMDRHLGHLNLTPADYVIFTVGTMTLWMLLYARVIVPALTRFNSKHLRNGIQPRIRMAIGIALSCI ANLIAGFVEHHRRLVSRGPTMSGNWLIPQLSLMGLAEALYLLAQLDFFNSRLPNGMKSLGNALVSLGQCFGMLAATLMLRQVKNHTGWVNDNLSRSKIDY YYWLVAGLSFFNLCYFLVCTWAYGNHHTISWDDDQLEASDGVEVLKVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10020101 [exp]	0	1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	9.7	0.9600
AT5G65005			Polynucleotidyl transferase, r...		Lus10041342 [exp]	11.2	0.9489
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	15.3	0.9555
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	16.2	0.9447
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	17.6	0.9548
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	19.3	0.9531
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	24.7	0.9530
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	25.8	0.9501
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	29.3	0.9501
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012573 [exp]	29.5	0.9288

Compare expression of checked genes

Lus10020101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.