Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10750 132 / 3e-39 Protein of unknown function (DUF1336) (.1) AT5G25020 100 / 5e-27 Protein of unknown function (DUF1336) (.1) AT4G19040 94 / 1e-23 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 92 / 4e-23 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G24990 91 / 5e-23 Protein of unknown function (DUF1336) (.1) AT1G06050 89 / 3e-22 Protein of unknown function (DUF1336) (.1) AT5G25010 87 / 1e-21 Protein of unknown function (DUF1336) (.1) AT5G35180 75 / 7e-17 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT2G28320 62 / 3e-12 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 58 / 5e-11 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026907 [exp] 171 / 2e-54 AT5G10750 416 / 1e-147 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 162 / 1e-50 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1) Lus10042428 [exp] 153 / 5e-47 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10012149 [exp] 91 / 2e-22 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 90 / 4e-22 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10008154 [exp] 79 / 1e-18 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10005308 [exp] 75 / 3e-17 AT1G06050 191 / 3e-59 Protein of unknown function (DUF1336) (.1) Lus10040015 [exp] 76 / 4e-17 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 73 / 4e-16 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014234 [exp] 127 / 9e-37 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.003G100600 [exp] 93 / 3e-23 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 93 / 3e-23 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 90 / 3e-22 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.017G027700 [exp] 75 / 4e-17 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 71 / 2e-15 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 66 / 1e-13 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 66 / 1e-13 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.009G011200 [exp] 65 / 2e-13 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.010G223400 [exp] 63 / 1e-12 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10020102 pacid=23142057 polypeptide=Lus10020102 locus=Lus10020102.g ID=Lus10020102.BGIv1.0 annot-version=v1.0 ATGGAAAGGACGTTGTCAATCGGCTCACTTTTGGGAAAAGCGCTGACGTGCAATTACCACAGGGGACCTAATTACTTGGAGATCGATGTGGATATAGGGA GCTCGGCGATAGCGACGGCGATACTGCATTTGGCGTTGGGATGCGTGACCAGCGTGACGATCGACATGGGGTTCGTGGTGGAGGCGCAGGAGGAAGAGGA GCTGCCGGAGAGGTTGATAGGAGCGGTTAGGATTTGTCAGATGGAGATGTCGTCGGCTACGGTTGTGGAAATGCAGACGGGTGGCGGGCGAGGGTCGACA GGATTGGCGAAGGTGAACCATCACGAAGAGGAACGATGA
AA sequence Show only first row Show all	>Lus10020102 pacid=23142057 polypeptide=Lus10020102 locus=Lus10020102.g ID=Lus10020102.BGIv1.0 annot-version=v1.0 MERTLSIGSLLGKALTCNYHRGPNYLEIDVDIGSSAIATAILHLALGCVTSVTIDMGFVVEAQEEEELPERLIGAVRICQMEMSSATVVEMQTGGGRGST GLAKVNHHEEER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	2.0	0.8217
					Lus10007510 [exp]	2.8	0.7881
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	4.5	0.7697
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	6.2	0.7882
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020723 [exp]	6.7	0.7432
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	9.2	0.7494
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	12.2	0.7577
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	14.1	0.7464
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	14.4	0.8058
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	15.2	0.6788

Compare expression of checked genes

Lus10020102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.