Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24970 920 / 0 Protein kinase superfamily protein (.1.2) AT1G79600 373 / 4e-119 Protein kinase superfamily protein (.1) AT1G71810 354 / 3e-112 Protein kinase superfamily protein (.1) AT3G24190 316 / 2e-96 Protein kinase superfamily protein (.1) AT4G31390 307 / 3e-94 Protein kinase superfamily protein (.1.2) AT2G39190 264 / 4e-77 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 233 / 1e-66 Protein kinase superfamily protein (.1.2.3) AT5G64940 233 / 3e-66 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G24810 142 / 1e-34 ABC1 family protein (.1.2) AT5G05200 122 / 4e-29 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035701 [exp] 352 / 2e-110 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 337 / 2e-105 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10032616 [exp] 285 / 3e-82 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 285 / 4e-82 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10036522 [exp] 275 / 7e-81 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 272 / 7e-81 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037291 [exp] 244 / 9e-71 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10041406 [exp] 246 / 2e-70 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006363 [exp] 240 / 4e-69 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G014000 [exp] 984 / 0 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 360 / 1e-113 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 342 / 3e-107 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 310 / 4e-94 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 300 / 1e-91 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 275 / 7e-81 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 242 / 2e-69 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 235 / 3e-67 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 233 / 2e-66 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G003400 [exp] 134 / 4e-32 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01636 [flax] [poplar] APH Phosphotransferase enzyme family CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10020103 pacid=23141991 polypeptide=Lus10020103 locus=Lus10020103.g ID=Lus10020103.BGIv1.0 annot-version=v1.0 ATGATTCAATCTTGTCCTGGTTTCCCGTGGCTTAATTTTGTTGCCCCCAATGAGGAATGTCTTCGGAATTCTCAAGCGCCACCGCCAGATTACGCTGCTT TCCCGTCATTCTCCACGGCCTTCACCAGTGTGCATGGCGAGAGTCCTTCTGGGAAGTATGCAAAATTAAGGAAAGAGTCACTTGAAAGTGAATTTGGACT GGCTCTTGATAATTACAGCTCCCGCAAGGCTTCGCTAATCTATCGTTTTGGTCCATTTCTAGCTATTTATAGAGCTGCAATCATCTCATATCATCTCTTG AACTTAACCGTTTGGCATTATTTGGTCAAGGATATGAGACAACGTGCCATCAAGTTTCGTGAAATTCTTGTCCGCTTGGGGCCTTTCTACATCAAGGCAA GTGAATCCTTTTCATATTTTCTTATTGATATTGATAGTGCTCTTGGGCAAGCTCTAAGTACCAGACCAGATATATTGCCATCTGTATATTGTCAGGAGCT TTCTAAGTTACAGGATCAAATACCGCCTTTTCCGACCCCTGTTGCCATTAAATCTATAGAGTCCCAATTGGGGCGGCTTATTTCAGAACTATTTGCTGAT ATTAGTCCAGAACCTATTGCTTCAGCTTCATTGGGCCAAGTTTATAAAGCTCATTTGCATTCTGGCGAGCTTGTAGCTGTCAAAGTACAGAGGCCCGGTA TGACACATTTATTAACACTTGATGCCCTATTATTCAATATGATTGGGGGCCAGTTAAAGCGCTTTGCTAAGGCTCGCAAGGATCTATTAGTTGCTGTTAA TGAGATGGTCAGACACATGTTTGATGAGATTGACTATGTCCTAGAGGCAAAAAATGCGGAACGTTTTGCGTTGCTTTATGGTTGTAAATCCTCTGCTAAA TTTGTGGATGGGGAAGATAATTGTGTCAAAGTTCCAAAAATATATTGGAATTATACACGGAAAGCTGTACTGACAATGGAATGGATTGATGGAATCAAGC TTACTAATGAAGCTCGCCTAAATGAGGCCTGCCTGGACAGAAAGAAAATGATTGACCAGGGATTATACTGCTCGCTAAGGCAATTGCTTGAAGTTGGATT TTTCCATGCCGACCCCCATCCAGGAAATCTTGTTGCCACTGACAGTGGTCGTCTTGCATATTTTGACTTTGGAATGATGGGAGACATTCCTCGGCACTAC CGTGTGGGACTAATACAAGTGCTCGTGCACTTTGTTAATCGCGATTCACGCGGTCTGGCGAATGACTTTCTTTCTCTGGGATTTCTTCCTGAAGGGGAAA AAATCAAACCAGTTGCCGATGCTTTGCGAGCATCCTTTGCTGATGATTCAAGACAATCAAAAGATTTCGAGGCAATAATGAACCAACTATATGAGGTTAT GTACGATTTTAACTTTTCACTTCCCCCAGACTACGCTCTGGTAACAAGAGCCCTTGGCTCTCTTGAAGGCACGGCAAAGGCACTTGATCCGAACTTCAAA GTTGTTGAGAGTGCATATCCCTTTGTCATTGGAAGGCTTTTGGCAGACCCAAATCCTGATATGAGGAAAATCTTGAGGGAACTACTCATTCGTTACGATG GATCCATAAGATGGAATAGGCTAGAACGCCTGATGGCAGCAATATCAGAACAGTCACCGGCGGAGACAGATGGAGAAGCTGTTAATCCCATAGAAGATTC ATCAAATCCTCTTGGATGGAAATCGTTTAATATGCGAGCAGTTGTTAGTGCAACAGAGGATCTTCTGCTTTTTGTTCTATCAGAGAAAGGGTCGAGGGTG CGGGTATTCCTACTCAGGGATATGGTTGAGGCAGCTGATGCATTTATGCAGGACGAAGTGTTAGGCGACATCTTAGATAAAAGCCCTTATCATAAGGAGC ATAAAATGCTAAGGAGGGTGGCGAATGGGTTTGGATACCTGAGCCGGGCGATAAAGATGGCTCCAGAGGTGTGGATCGCAATGCTTGTACGGATGGCAGT GAAACCCGAGTTCCATCAGTTTTCGGTCGATGTTTTGTCAGCCTTGGCCATGCATTTTAGTCGTAGAGTGCCAGAGACCTACTTCGTATGTATGTCGAAG CTGCTACATCGTTGCAGTAGAAACTCTAGATATAGTGATGAACCTCATATTTGA
AA sequence Show only first row Show all	>Lus10020103 pacid=23141991 polypeptide=Lus10020103 locus=Lus10020103.g ID=Lus10020103.BGIv1.0 annot-version=v1.0 MIQSCPGFPWLNFVAPNEECLRNSQAPPPDYAAFPSFSTAFTSVHGESPSGKYAKLRKESLESEFGLALDNYSSRKASLIYRFGPFLAIYRAAIISYHLL NLTVWHYLVKDMRQRAIKFREILVRLGPFYIKASESFSYFLIDIDSALGQALSTRPDILPSVYCQELSKLQDQIPPFPTPVAIKSIESQLGRLISELFAD ISPEPIASASLGQVYKAHLHSGELVAVKVQRPGMTHLLTLDALLFNMIGGQLKRFAKARKDLLVAVNEMVRHMFDEIDYVLEAKNAERFALLYGCKSSAK FVDGEDNCVKVPKIYWNYTRKAVLTMEWIDGIKLTNEARLNEACLDRKKMIDQGLYCSLRQLLEVGFFHADPHPGNLVATDSGRLAYFDFGMMGDIPRHY RVGLIQVLVHFVNRDSRGLANDFLSLGFLPEGEKIKPVADALRASFADDSRQSKDFEAIMNQLYEVMYDFNFSLPPDYALVTRALGSLEGTAKALDPNFK VVESAYPFVIGRLLADPNPDMRKILRELLIRYDGSIRWNRLERLMAAISEQSPAETDGEAVNPIEDSSNPLGWKSFNMRAVVSATEDLLLFVLSEKGSRV RVFLLRDMVEAADAFMQDEVLGDILDKSPYHKEHKMLRRVANGFGYLSRAIKMAPEVWIAMLVRMAVKPEFHQFSVDVLSALAMHFSRRVPETYFVCMSK LLHRCSRNSRYSDEPHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	0	1
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	7.5	0.7381
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	12.6	0.6554
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	15.7	0.7223
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	19.2	0.7272
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	21.0	0.7173
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	22.5	0.7333
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	23.1	0.6316
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10000198 [exp]	24.4	0.6764
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10000498 [exp]	26.1	0.6354
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	38.2	0.6681

Compare expression of checked genes

Lus10020103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.