Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31750 525 / 0 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 486 / 9e-173 Protein phosphatase 2C family protein (.1) AT5G10740 477 / 2e-170 Protein phosphatase 2C family protein (.1) AT1G43900 348 / 1e-119 Protein phosphatase 2C family protein (.1) AT5G53140 332 / 2e-112 Protein phosphatase 2C family protein (.1) AT1G78200 228 / 2e-73 Protein phosphatase 2C family protein (.1.2) AT2G20630 211 / 5e-67 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G34750 209 / 3e-66 Protein phosphatase 2C family protein (.1) AT4G28400 209 / 3e-66 Protein phosphatase 2C family protein (.1) AT1G22280 206 / 6e-65 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026908 [exp] 557 / 0 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 464 / 6e-167 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 462 / 3e-166 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 353 / 3e-122 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 350 / 3e-120 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 343 / 7e-115 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 338 / 3e-113 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10039341 [exp] 317 / 3e-106 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 215 / 2e-68 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013900 [exp] 536 / 0 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 531 / 0 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 375 / 3e-131 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 372 / 3e-130 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 342 / 3e-117 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 337 / 2e-115 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 214 / 4e-68 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 213 / 2e-67 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 209 / 3e-66 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 209 / 3e-66 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10020104 pacid=23142047 polypeptide=Lus10020104 locus=Lus10020104.g ID=Lus10020104.BGIv1.0 annot-version=v1.0 ATGGGGTCAAGTGCTGGAGAGCTCCAGGGCACAGGTTATCTTAATTCAGTGCTCATGTCTTCCAATCAGGTTTATGCGCAGGACGGCCCTGTAAGTGGCG GAGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGGTATGCAAGCTCGCCGGGGAAGAGATCTTCCATGGAAGACTTTTACGAAACAAGAATTGATGGTGT TGATGGGGAAATAGTTGGTCTTTTTGGAGTCTTCGATGGTCATGGGGGTGCACACGCTGCTGAATATGTGAAACAAAACCTTTTCAGTAATCTGATCAGC CACCCCAAGTTCATATCAGATACTAAATCTGCTATAGCTGATGCTTACAATCACACAGACTCGGAGTTCCTCAAATTAGAAAATGCTCACAATAGGGATG CAGGATCAACTGCTTCCACAGCTATTCTTGTTGGTGATCGGCTTCTTGTCGCCAATGTTGGAGATTCCAGAGCTGTCATATGCCGGGCTGGAAATGCTAT TGCTGTTTCTAGAGATCATAAGCCAGACCAAACTGATGAACGGAAAAGGATTGAAGATGCAGGAGGGTTTGTATTGTGGGCAGGCACCTGGAGGGTTGGT GGTGTTCTTGCTGTCTCTCGGGCATTTGGGGATCGGCTCTTGAAGCAGTATGTCGTTGCTGACCCAGAAATTCAGGAGGAGAAAGTTGACAGTTCTCTTG AATTTCTCATCCTTGCAAGTGATGGATTATGGGATGTCGTAACAAATGAGGAGGCTGTTGAGATGACGAAAGCAATCGAGGACCCGGAGCAGGGGGCGAA GAGGCTGTTACAAGAAGCGTACCAGAGAGGAAGCCCAGATAACATTACATGCGTCGTAGTTCGCTTCTTGGGTGGTGGTGGTGCTACCTCTCAGTCTCCT GGAAGTAACCAACATCACAGTAGTAACTCGCACTTGCCTGCAAGCTGA
AA sequence Show only first row Show all	>Lus10020104 pacid=23142047 polypeptide=Lus10020104 locus=Lus10020104.g ID=Lus10020104.BGIv1.0 annot-version=v1.0 MGSSAGELQGTGYLNSVLMSSNQVYAQDGPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGAHAAEYVKQNLFSNLIS HPKFISDTKSAIADAYNHTDSEFLKLENAHNRDAGSTASTAILVGDRLLVANVGDSRAVICRAGNAIAVSRDHKPDQTDERKRIEDAGGFVLWAGTWRVG GVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVTNEEAVEMTKAIEDPEQGAKRLLQEAYQRGSPDNITCVVVRFLGGGGATSQSP GSNQHHSSNSHLPAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	0	1
AT3G05990			Leucine-rich repeat (LRR) fami...		Lus10002456 [exp]	2.2	0.8679
AT1G51720			Amino acid dehydrogenase famil...		Lus10006872 [exp]	2.4	0.8655
					Lus10025720 [exp]	15.9	0.8264
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10022265 [exp]	21.0	0.8081
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	23.7	0.8563
AT1G55200			Protein kinase protein with ad...		Lus10008566 [exp]	23.7	0.8107
AT5G67390			unknown protein		Lus10011531 [exp]	29.5	0.7680
AT3G07530			unknown protein		Lus10040483 [exp]	32.2	0.8384
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10001612 [exp]	37.8	0.8407
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	43.1	0.8419

Compare expression of checked genes

Lus10020104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.