Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24765 288 / 1e-100 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G14670 190 / 6e-62 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G70490 189 / 2e-61 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 189 / 2e-61 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 189 / 2e-61 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 188 / 3e-61 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G47170 188 / 4e-61 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G17060 177 / 2e-56 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 174 / 1e-55 ATARFB1C ADP-ribosylation factor B1C (.1) AT3G22950 153 / 3e-47 ATARFC1 ADP-ribosylation factor C1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026910 [exp] 211 / 2e-70 AT2G24765 275 / 4e-96 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Lus10030884 [exp] 191 / 4e-62 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 191 / 1e-61 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 191 / 5e-61 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 188 / 6e-61 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 191 / 7e-59 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10009571 [exp] 178 / 6e-57 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 176 / 4e-56 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10030605 [exp] 190 / 6e-56 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096077 [exp] 280 / 3e-97 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 279 / 5e-97 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 278 / 1e-96 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 276 / 7e-96 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G005500 [exp] 191 / 3e-62 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.014G116500 [exp] 191 / 3e-62 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 191 / 3e-62 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 191 / 3e-62 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 191 / 3e-62 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 191 / 3e-62 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10020106 pacid=23142050 polypeptide=Lus10020106 locus=Lus10020106.g ID=Lus10020106.BGIv1.0 annot-version=v1.0 ATGGGGATTCTGTTCACTCGGATGTTTTCTTCTGTATTCGGCAACAAAGAAGCTCGAATTCTCGTCCTCGGCCTCGACAATGCCGGAAAAACCACTATTC TCTATCGGCTTCAAATGGGCGAGGTAGTGTCCACGATCCCGACAATTGGATTCAACGTGGAAACTGTACAGTATAACAACATTAAATTCCAGGGAGTTTT AGTGCTTCTTAACGAATTGTCTTGTCATGCTGGGGAGCTAGAAATTGCGTGCATGTCAGGAACTGAATCTAGTTTGTTTCTCCATTTGCCTTATTGGAGA TGCTATTTCCCGAATACTCAAGCTGTCATTTATGTGGTTGATTCAAGTGACACTGATAGAATTGGAATAGCCAAGGAAGAATTCCATGCAATTCTGGAGG AAGAAGAATTGAGAGGTGCCATTGTTCTCATCTTTGCAAATAAGCAGGATCTCCCTGGTGCACTTGATGATGCTGCAGTGACCGAGGCTCTGGAGTTGCA CAAGATTAAGAACCGGCAATGGGCCATCTTCAAAACTTGTGCTGTTAAGGGTGAAGGCCTCTATGAGGGATTGGACTGGTGA
AA sequence Show only first row Show all	>Lus10020106 pacid=23142050 polypeptide=Lus10020106 locus=Lus10020106.g ID=Lus10020106.BGIv1.0 annot-version=v1.0 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQGVLVLLNELSCHAGELEIACMSGTESSLFLHLPYWR CYFPNTQAVIYVVDSSDTDRIGIAKEEFHAILEEEELRGAIVLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTCAVKGEGLYEGLDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	0	1
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10040611 [exp]	2.2	0.7763
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10029418 [exp]	2.4	0.7870
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	2.8	0.8441
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	4.0	0.7801
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	7.7	0.8114
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	11.8	0.7519
AT4G23710		VAG2 ,VATG2 ,VH...	vacuolar ATP synthase subunit ...		Lus10021301 [exp]	12.4	0.7370
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	12.5	0.7608
AT2G40935			PLAC8 family protein (.1.2.3)		Lus10005257 [exp]	13.4	0.7271
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	17.4	0.7375

Compare expression of checked genes

Lus10020106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.