Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25760 79 / 3e-19 ATGDU2 glutamine dumper 2 (.1) AT4G31730 72 / 3e-16 ATGDU1, GDU1 glutamine dumper 1 (.1) AT2G24762 67 / 3e-14 ATGDU4 glutamine dumper 4 (.1) AT5G57685 66 / 3e-14 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT5G24920 65 / 6e-14 ATGDU5 glutamine dumper 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026911 [exp] 216 / 2e-72 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10008910 [exp] 81 / 2e-19 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 77 / 7e-18 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006987 [exp] 66 / 1e-13 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019985 [exp] 62 / 3e-12 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019986 [exp] 62 / 3e-12 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 61 / 1e-11 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013600 [exp] 94 / 2e-24 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.006G267900 [exp] 92 / 6e-24 AT5G57685 83 / 2e-20 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.006G173901 [exp] 74 / 1e-16 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.017G107400 [exp] 47 / 2e-07 AT4G31730 76 / 1e-18 glutamine dumper 1 (.1) Potri.017G107300 [exp] 44 / 6e-06 AT4G25760 75 / 1e-18 glutamine dumper 2 (.1) Potri.004G108800 [exp] 42 / 2e-05 AT5G24920 57 / 2e-11 glutamine dumper 5 (.1) Potri.004G108440 [exp] 40 / 6e-05 AT5G38770 46 / 1e-07 glutamine dumper 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020107 pacid=23142037 polypeptide=Lus10020107 locus=Lus10020107.g ID=Lus10020107.BGIv1.0 annot-version=v1.0 ATGAGACCAATCAGCGCCTCAGAAGCTACCAGCATGACTTCTTCATCAAACGCAATGTTGACGCCGCCGGCGATCCCGCATCAGATCATGCGCTCACCGA TGCACTCTCCAGTGCCGTACCTATTCGGAGGCCTGGCGGCGATGTTGGGGCTGATCGCTTTCGCCTTGCTCATCTTAGCCTGCTCTTACTGGAGGCTTTC CAACCGCCGCCAAAGAGACGGCGACATCGAGAGCGGGAATGAAAAAGAAGGCAACAAAACAGAGAAAGTTTTCGAAGAGAAGTTTCTGGTAATCATGGCT GGAGACAACAAGCCTACGTTCCTGGCCACCCCTGCTTCCAACAGACCTACCTATTGCGGATGCGGAGACAACAAGGGCTTTGACAGAGACGGGATGAAGA TGGAGAATGACGAGAAAGTTAAACGAGAATCTCAGGACCATGGAGAACCCGCAACGACAGCGGCAATCGAAGAAGAAGCGGAAGAAAGGGAAACGGCGGC GGAGAGGCGAGAAGGACAAGATTAA
AA sequence Show only first row Show all	>Lus10020107 pacid=23142037 polypeptide=Lus10020107 locus=Lus10020107.g ID=Lus10020107.BGIv1.0 annot-version=v1.0 MRPISASEATSMTSSSNAMLTPPAIPHQIMRSPMHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSNRRQRDGDIESGNEKEGNKTEKVFEEKFLVIMA GDNKPTFLATPASNRPTYCGCGDNKGFDRDGMKMENDEKVKRESQDHGEPATTAAIEEEAEERETAAERREGQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	0	1
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10026911 [exp]	1.4	0.8834
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	2.6	0.8865
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	5.5	0.8530
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	5.7	0.8390
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	6.3	0.8653
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	8.1	0.8520
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	9.0	0.8719
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	12.5	0.8117
AT5G43150			unknown protein		Lus10010543 [exp]	15.9	0.8294
AT3G55420			unknown protein		Lus10040295 [exp]	16.6	0.8132

Compare expression of checked genes

Lus10020107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.