Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10730 386 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 259 / 2e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32220 178 / 3e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035719 [exp] 257 / 7e-85 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010419 [exp] 182 / 8e-55 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 122 / 2e-33 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012126 [exp] 102 / 1e-26 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 78 / 1e-17 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 68 / 2e-13 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 44 / 0.0001 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032369 [exp] 43 / 0.0001 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10023096 [exp] 42 / 0.0004 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013400 [exp] 425 / 2e-151 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G268000 [exp] 425 / 4e-151 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 328 / 4e-113 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G136900 [exp] 179 / 2e-54 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G093300 [exp] 42 / 0.0002 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.003G138400 [exp] 41 / 0.0006 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10020108 pacid=23141960 polypeptide=Lus10020108 locus=Lus10020108.g ID=Lus10020108.BGIv1.0 annot-version=v1.0 ATGAGGACTGTTGCGTCGCGGTTGATCCACTCGAGAGCTTCTGTATCGCGATTGTGTACTATTGCGCGGTCCAGTGAGGGAAGGTGTTTCTCTACTGATT CTAATAAGGTGGACGAGCCTTTCAAAGTCGAGGAAGCAGAAACGGTGAACGTCCCTCCGCCCCCTAAAGATAAGTTGCTGGTGCTAGGTGGAAATGGTTT TGTTGGCTCCCATATCCTCAGAGAGGCTCTAGATCGTGGCTTATCCGTTGCTAGCCTTAGCAGATCCGGGAAGTCATCGTTGCATGATCCATGGGCTAAC AATGTCATCTGGTATCAAGGAAACCTTCTTTCACCTGATTCATGGAAGGATGCTCTAGATGGGGTGTCTGCGGTTATTTCTTGTGTTGGTGGGTTTGGCT CACAATCTTATATGTACAAGATCAACGGGACTGCAAATATCAATGCAATTAGAGCTGCTGCAGAGAAAGGTGTTAAACGATTTGTTTACATTTCTGCTGC TGACTTTGGGTTGGCTAACTACATACTACGAGGATATTATGAAGGAAAGAGAGCTGCTGAAGCAGAGTTACTCGCTAAGTTTCCATATGGTGGAATAATT CTGAGGCCGGGCTTTATTTATGGGACTCGTGGTGTTGGAAGTGTGAAGTTGCCTCTTGGTTTGATTGGTTCCCCAATGGAAATGACTGTAACGACGATGG CTGACGTGGTATATTGCGTTGCACCACAGGTTCTTCAACATGCCAAGCCGCTGACCCAGCTTCCAGTCATCGGACCACTGTTCACACCTCCGGTGGATGT GACTGCGGTGGCAAGGGTTGCTTTGAGGGCAGCAACTGATCCTGTTTTCCCTCCGGGTGTCATTGATGTTCATGGAATACAGCGTTACAACCAACCATTG TCGAGATAG
AA sequence Show only first row Show all	>Lus10020108 pacid=23141960 polypeptide=Lus10020108 locus=Lus10020108.g ID=Lus10020108.BGIv1.0 annot-version=v1.0 MRTVASRLIHSRASVSRLCTIARSSEGRCFSTDSNKVDEPFKVEEAETVNVPPPPKDKLLVLGGNGFVGSHILREALDRGLSVASLSRSGKSSLHDPWAN NVIWYQGNLLSPDSWKDALDGVSAVISCVGGFGSQSYMYKINGTANINAIRAAAEKGVKRFVYISAADFGLANYILRGYYEGKRAAEAELLAKFPYGGII LRPGFIYGTRGVGSVKLPLGLIGSPMEMTVTTMADVVYCVAPQVLQHAKPLTQLPVIGPLFTPPVDVTAVARVALRAATDPVFPPGVIDVHGIQRYNQPL SR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	0	1
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	1.4	0.9200
AT2G29900		PS2	Presenilin-2 (.1)		Lus10035137 [exp]	2.8	0.8793
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	3.5	0.9045
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	3.7	0.9060
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	6.7	0.8711
AT1G66080			unknown protein		Lus10031356 [exp]	9.4	0.8918
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	9.8	0.8601
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	10.5	0.8915
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	10.7	0.8532
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	12.4	0.8610

Compare expression of checked genes

Lus10020108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.