Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29120 788 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 764 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 721 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G27100 693 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24720 685 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G24710 662 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 647 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT5G11180 625 / 0 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT4G31710 596 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT1G42540 455 / 3e-145 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026913 [exp] 1440 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 1290 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 1054 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 734 / 0 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10027171 [exp] 434 / 5e-137 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10035980 [exp] 434 / 7e-137 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10039671 [exp] 431 / 6e-136 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 421 / 3e-132 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 396 / 3e-123 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G012100 [exp] 950 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 944 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 936 / 0 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 916 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013000 [exp] 874 / 0 AT2G29120 908 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G011500 [exp] 870 / 0 AT2G29110 793 / 0.0 glutamate receptor 2.8 (.1) Potri.006G270400 [exp] 855 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268400 [exp] 853 / 0 AT2G29110 835 / 0.0 glutamate receptor 2.8 (.1) Potri.006G268700 [exp] 852 / 0 AT2G29120 855 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G268900 [exp] 848 / 0 AT2G29110 882 / 0.0 glutamate receptor 2.8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10020109 pacid=23142025 polypeptide=Lus10020109 locus=Lus10020109.g ID=Lus10020109.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGACATTGATGAAGCTGCAAAGTAGTTATATTTTACTTCTACTGTTCAGCATGAGCTTGTTCGCTACAGCTCATCCCGTCATGAATGATA ATAATAGTGCGGCGCCGATGGCGGCGGGGCAACGTAACGCGACAGTTGCGGTGAAGGTCGGAGTGATTCTTGACTCGAACGGAAGCGACGACCTTGTTGG CCGGGTTGGGCTTAGCTGCATCCAAATGGCAGTTTCAGATTTCTACGCGGCTCATCCGAACTACACCACCCGCCTCGCCATCCATCCCAGGGATTCTCCC GGAGACGACGTCGTTCAGGCTGCTGCTTCAGCTGTTGATTTGATAAAGAATGTTCAAGTGCACGCAATATTGGGACCAGAAACATCTATGCAAGCTGATT TCATCATAGCTCTTGGAGAAAAAGCTCAAGTTCCAATCATCTCATTCTCGGCATCAAGCCCCACCATCGATGCTTCAAACCACAACCCTTACTTCTTCCG TGCTACCCCAACAGACTCAACTCAAGTAAATGTCATAAGCGCCATAATGAAAGCCTTTGGATGGAGGGAAGCTGTACCAATCTACATCGACAATGACTTT GGTAATGGAATCATACCTTACTTGGTAGCCGCTCTTGAAGCTATCGATTCCCACGTCCCATATCGTGTCGGAATTCCCCCATCCGCTACGGATGATTTAA TTGGTGAAGAGCTTTACAAGCTTATGACGATGCAAACTAGAGTATTCATCGTACATATGAGTCCCCATATGGGAGCGAGGCTCTTTGCCAAGGCTAGAGA AGCTAGTATGATGACAGCAGGTTACGTGTGGATTATGACGGATGGAATCACTGCTTTCTTGAATTCCATGGATCGTTCTGTTCTTGAATCAATGCAGGGT GTGGTTGGTATCAGACCTTATGTGCCAGAAACTAGAGAAGTTATCCGTTTTCGTGAACGGTGGAAGAAGAAGTTCTACCAAGACCACCTCAACAGTTATG GATTGTGGGCATATGATGCTACTACAGCACTAGCCATGGCAGTTGAGAATACTAACGTTGGAGATAGAAACTCTGGTTTCACATATAATAATGACAATGT TTCTTCAACTGATCTTGAAAGGTTAGGGGTGTTTACAGGTGGTCCAACTCTGGTTCATGAGCTATCACAAACAAGGTTCAAAGGACTGAGTGGAGCTTTT GTACTTGAAAAAGGGCAATTGAGAGCTTCAGATTATCAGATATTGAATGTGAATGGTAATGGAGTCAGAGGGATAGGGTTTTGCTCTTCTGAAACCGGGT GGCTCACTAAGGAAAAAATGAAATTGTCTTCATCAACAGGAGATGTTTCCAAGTTGCTTGGGCCAATCATATGGCCAGGGGATGAAATTTCAGCTCCTAA AGGGTTTGAGATCCCAACAAATGGGAAGACGTTGAAGATAGGGGTGCCTGTGAAGCATGGTTTCTTTGAGTTTGTTAAAGTCGACAACAGTACTGGCGTT ACTACTGGATACAGCATCGACATTTTTGAAGCAGTTCGCAATGCACTGCCGTATGCACTTCCCATAGAGTATGTGCCTTTTGCTAAACCTGACGGAGAAA GCGCCGGGCACTACAATGATCTGGTTTACCAAGTCTTCTTAGGGAATTACGATGGTGTAGTGGGAGATATAACCATCCGAGCCAATAGGTCGAAGCATGT AGACTTCTCATTGCCGTACACAGAATCAGGAGTGGCAATGTTGGTACCAGTGAAAGAAAACAGAAGCAAGAATGCATGGGTGATCAATAACGATTTCCGA GGACCTCCTTCCCATCAGGCTGGAACTAGCTTCTGGTTTTCCTTCTCCACCATGGTTTTCGCCCACAGGGAAAAGGTAGTGAGCAACTTGACAAGGGCAG TGATGATAATTTGGTGCTTCGTGGTTCTAATACTGACTCAGAGCTACACTGCGAGTTTGACTAGCCTTCTGACAGTCCAACAGCTGCTACCTACAATTAC AAACATAAATGACTTAAGCAAAGGGGATCCTGTGGGGTTTCAGGAGTCAACATTCGTAGAGGATCTTCTAACACAAGAGGGCTACCACAATAGGGTACCT TTTAATAGCACAGAGCAGTGCAACTCGCTTTTCTCACAAGGAAAAATCGTTGCTGCGTTCGACGAAGTCCCCTACATGAAGCTATTCCTAGCAAAGTATT GCTCCAAATACACCATCATCGACCTACCTTTTAAAACGGATGGCTTCGGATTTGTATTCCCCAAAGGTTCTCCACTTGTTGATGACATTTCGAGAGCAGT TCTGAATGTAACGGAGGGGGGCGGAATGTTGAAAATCCAAAATAAATGGTTCGACTTCAAGGGTAGGTGCCCGGATTTGAGTGCATCAGTTTCTTCCGAG AGCGAGCGGCTCGGGTTAAATAGCTTCTGGAGCCTATTTGTGATAGCTGGAGTTGCTGCACTCTCGGCACTCTTCGCTTTTGCAGGCATGTTCCTTTATG AGCACAGGAATTCCCTGCTGCATGATACGAATCCTTCCTTCTGGGGAAGGATCCTAAATCTGTTGAAGACCTTTGACGACAAGGATCTCGAATGCCATAC TTTCAGGACTGAGAGGGATTATGGTGAGGTGAATCTTGCCAATTTGAACAATGTGCATCAACAGAGCCCCTCCACTTACTCTGTGCAGGAGGCGGATTTG GATCGTGATTCAATACCGCAGATGCCGGTTACTCCGTCTCTCGAGGCTCGTAATGATATAACACCTCAAGAATCAGCACAAGAAATAGAGACGAGTTTGG TAAGTACTCGCATCCAAATTGAAAACTGA
AA sequence Show only first row Show all	>Lus10020109 pacid=23142025 polypeptide=Lus10020109 locus=Lus10020109.g ID=Lus10020109.BGIv1.0 annot-version=v1.0 MEEGTLMKLQSSYILLLLFSMSLFATAHPVMNDNNSAAPMAAGQRNATVAVKVGVILDSNGSDDLVGRVGLSCIQMAVSDFYAAHPNYTTRLAIHPRDSP GDDVVQAAASAVDLIKNVQVHAILGPETSMQADFIIALGEKAQVPIISFSASSPTIDASNHNPYFFRATPTDSTQVNVISAIMKAFGWREAVPIYIDNDF GNGIIPYLVAALEAIDSHVPYRVGIPPSATDDLIGEELYKLMTMQTRVFIVHMSPHMGARLFAKAREASMMTAGYVWIMTDGITAFLNSMDRSVLESMQG VVGIRPYVPETREVIRFRERWKKKFYQDHLNSYGLWAYDATTALAMAVENTNVGDRNSGFTYNNDNVSSTDLERLGVFTGGPTLVHELSQTRFKGLSGAF VLEKGQLRASDYQILNVNGNGVRGIGFCSSETGWLTKEKMKLSSSTGDVSKLLGPIIWPGDEISAPKGFEIPTNGKTLKIGVPVKHGFFEFVKVDNSTGV TTGYSIDIFEAVRNALPYALPIEYVPFAKPDGESAGHYNDLVYQVFLGNYDGVVGDITIRANRSKHVDFSLPYTESGVAMLVPVKENRSKNAWVINNDFR GPPSHQAGTSFWFSFSTMVFAHREKVVSNLTRAVMIIWCFVVLILTQSYTASLTSLLTVQQLLPTITNINDLSKGDPVGFQESTFVEDLLTQEGYHNRVP FNSTEQCNSLFSQGKIVAAFDEVPYMKLFLAKYCSKYTIIDLPFKTDGFGFVFPKGSPLVDDISRAVLNVTEGGGMLKIQNKWFDFKGRCPDLSASVSSE SERLGLNSFWSLFVIAGVAALSALFAFAGMFLYEHRNSLLHDTNPSFWGRILNLLKTFDDKDLECHTFRTERDYGEVNLANLNNVHQQSPSTYSVQEADL DRDSIPQMPVTPSLEARNDITPQESAQEIETSLVSTRIQIEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10020109 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	6.2	0.9314
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	9.2	0.9296
AT5G39380			Plant calmodulin-binding prote...		Lus10034717 [exp]	10.9	0.8476
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	11.1	0.9266
					Lus10038295 [exp]	12.8	0.9252
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	14.7	0.9212
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	14.7	0.9121
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	17.2	0.9109
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	17.3	0.9094
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	17.5	0.9112

Compare expression of checked genes

Lus10020109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.