Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10720 176 / 4e-52 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 77 / 2e-17 AHK3 histidine kinase 3 (.1) AT5G35750 67 / 5e-14 AHK2 histidine kinase 2 (.1) AT2G01830 65 / 3e-13 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 58 / 2e-10 AHK1, ATHK1 histidine kinase 1 (.1) AT5G26594 49 / 3e-08 ARR24 response regulator 24 (.1) AT1G66340 48 / 4e-07 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT5G07210 40 / 0.0002 GARP ARR21 response regulator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026917 [exp] 276 / 2e-88 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10000137 [exp] 191 / 1e-64 AT5G10720 113 / 1e-30 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10000105 [exp] 185 / 6e-62 AT5G10720 114 / 7e-31 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10037032 [exp] 74 / 4e-16 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10015773 [exp] 74 / 5e-16 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10003686 [exp] 71 / 3e-15 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 71 / 3e-15 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10006370 [exp] 70 / 1e-14 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10041891 [exp] 69 / 1e-14 AT2G17820 1561 / 0.0 histidine kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G011400 [exp] 192 / 6e-58 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 192 / 7e-58 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.008G137900 [exp] 74 / 3e-16 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 74 / 4e-16 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 70 / 8e-15 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 69 / 2e-14 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.005G111700 [exp] 67 / 7e-14 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.007G056400 [exp] 66 / 3e-13 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.001G057400 [exp] 62 / 3e-12 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.013G009700 [exp] 61 / 8e-12 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10020114 pacid=23141998 polypeptide=Lus10020114 locus=Lus10020114.g ID=Lus10020114.BGIv1.0 annot-version=v1.0 ATGATGAAGCAGTTAGGGCACGACATAATTGTGGTGAACAATGGAGTCGAAGCAGTGAAGGCAATACAACGGGAACACTATGATCTCGTTCTAATGGATG TATATATGCCAGTTATGGATGGCCTTCAAGCTACAAGGATAATCCGTTCCTACGAGGAAACAGGAAGGTGGGATGCAGCTGTCCAAGCTGGAATTGAGCA ATCAGCCACTTGCTTACAAAATGGGCATAGCTTCCATCCCAGTTCCAGAGATCGTATCCCCATAGTCGCGATGACAGCAAATGCACTATCAGAGAGTGCA GAGGAATGCTATGCAAATGGGATGGACTCGTTTGTGTCAAAACCAGTTACCCTCCAAAAGCTAAGAGATTGTATGGATGAATACTTACCTTGA
AA sequence Show only first row Show all	>Lus10020114 pacid=23141998 polypeptide=Lus10020114 locus=Lus10020114.g ID=Lus10020114.BGIv1.0 annot-version=v1.0 MMKQLGHDIIVVNNGVEAVKAIQREHYDLVLMDVYMPVMDGLQATRIIRSYEETGRWDAAVQAGIEQSATCLQNGHSFHPSSRDRIPIVAMTANALSESA EECYANGMDSFVSKPVTLQKLRDCMDEYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020114 [exp]	0	1
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	4.9	0.9316
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	7.9	0.9251
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	8.8	0.9171
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	8.9	0.9215
AT3G21710			unknown protein		Lus10039666 [exp]	10.8	0.9139
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	11.0	0.9122
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	13.4	0.9231
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	14.5	0.9087
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	14.8	0.9135
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	15.2	0.9208

Compare expression of checked genes

Lus10020114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.