Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10720 808 / 0 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 144 / 4e-35 AHK3 histidine kinase 3 (.1) AT2G01830 143 / 6e-35 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G35750 133 / 1e-31 AHK2 histidine kinase 2 (.1) AT5G10680 106 / 1e-25 calmodulin-binding protein-related (.1) AT2G17820 101 / 1e-21 AHK1, ATHK1 histidine kinase 1 (.1) AT1G66340 96 / 4e-20 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 83 / 3e-16 ERS1 ethylene response sensor 1 (.1) AT2G47430 82 / 2e-15 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT1G09570 54 / 3e-07 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026917 [exp] 1487 / 0 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10012325 [exp] 160 / 3e-40 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10030772 [exp] 150 / 5e-37 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 150 / 5e-37 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10006370 [exp] 149 / 1e-36 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10037032 [exp] 145 / 1e-35 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10015773 [exp] 144 / 6e-35 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10003686 [exp] 142 / 2e-34 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 140 / 7e-34 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G011400 [exp] 1072 / 0 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 1062 / 0 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.014G164700 [exp] 156 / 6e-39 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 155 / 1e-38 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 152 / 9e-38 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G057400 [exp] 142 / 2e-34 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.003G171000 [exp] 138 / 3e-33 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.002G201500 [exp] 118 / 2e-27 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.001G204200 [exp] 115 / 4e-26 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.005G111700 [exp] 106 / 4e-23 AT2G17820 1435 / 0.0 histidine kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain
Representative CDS sequence Show only first row Show all	>Lus10020115 pacid=23142042 polypeptide=Lus10020115 locus=Lus10020115.g ID=Lus10020115.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTTGATGTTATTGAAGACATGGAAATGGAGATTGAGGCTCTCCCCTCCATGTGGCCCGACGACATCAACAGCGAAAAGCCTTACAATGTCG AGAAACCGGGAGGGGAGCAGGACATGCTTGAAGAAGTTACAATAACCGTGGATGATCCATGCGTTGTCGATTTCAAGCATCTAGACGAGCTCAACAACTA CACGGACCGAGGCTCTTCCCAGCTGGCTCACCTGATGAAGCACTGGGAATATCAGCAGGCCAACGCCGTTCGCCTGCTCAGGGAAGAGCTCGACATCCTC AGCAGGCAGAGGGAGGAAGTGGAGCTCAAGAAGTTGGAGATCATTGAGAATTTCCGGTTCCAGGAAGATTCATGTGGAGGTGACAAGAGACCGATTTCCA TATTGGACGATGCTAATATGGAAATCTACGAGAGGATTCCGAGGAAGAAGTATGATGGGTTTGTTGTACAGAGTAACAGAGTTGATCAGCTTGATGTCGA GTCTGACACGGTTGGGTATTGGAAAGCACGAGCAGGGAATCTGGAGATGCTGCTGGATGCTAGTGCCCATAGAGAGCAGATACTTATGGAGAAGCTGCAG GAGACCATCAAGAGTTTGGAGAGGGAGTCATCACCTGTGGAGGAGTTGTCACAGATTCTCAAGAGAGCTGATAATTTCTTGCATTTCGTCCTCCAGAATG CTCCTGTTGTAATAGGCCATCAGGATAACGAGTTGAAGTACCGGTTCATATACAACCATTTCCCCAGCTTGCATGAGCAGGACATATTGGGGAAGACAGA TGTGGAGATCTTCAATGGTGCTGGTGTTAAGGAGTCTCAAGACTTCAAGAGAGAAGTTCTTGAGAAAGGGTTGCCAGCAAAAAGAGAAATTACATTTGAG ACGGAGCTATTTGGATTAAAAACGTTTCTGATATATGTAGAACCTGTATTCAGCAAAGCAGGGGACACAATTGGTGTAAACTATATGGGAATGGATGTTA CAGACCAGGTCAGGAAAAGGGAGAAGATGGCAAAGCTTCGGGAGGAGATTGCTGTACAGAAGGCAAAGGAAACTGAACTGAATAAGACAATCCACATAAC AGAGGAGACCATGCGTGCAAAACAGATGCTAGCTACCATGTCACACGAGATAAGATCTCCTCTATCTGGTGTTGTGAGCATGGCTGAGATTCTGTCCAGC ACGAAGCTGGATCGCGAGCAAAGGAACCTTCTGAATGTGATGATATCTTCGGGAGACTTGGTTCTTCAGCTCATAAATGACATACTTGACTTGTCGAAAG TTGAGTCAGGTGTAATGAAGTTAGAAGCTACAAAATTCCGGCCCCGAGAAGTGGTAAAGCATGTCCTACAGACTGCTGCTGCTTCGTTGCAGAAGATACT GACCCTGGAAGGACGCATCGCCGATGATGTTCCCATCGAGATCATTGGAGATGTTTTAAGGATTAGACAGATCCTTACCAATTTGATCAGTAATGCGATA AAGTTCACACATGAAGGGAAAGTGGGAATTGACCTTTATGTCGTATCAGACCCAGAAGTAAACCACCAGAAGGTACCTGTGGATCAATCAACTGCAAATG GGCAAAAGGAAGAGAAATGTACATCAACATCACAGAGTTGCAACGGCCATCAAAATGGCTTTCATGACGATAAACATGGAGATGATGATCCTAGAACCCT AGACAACGGAAGTACAACAGATAGAGAAGATGAAAAGGAAGAGTGCCATATACCGGAAACAACAGTGTGGCTACGATGCGATGTTTACGACACTGGAATC GGAATACCAGGTACAGACATCTCAGATTCTGTCCCTCTGCCACCATCTCAGGATTCTGATGATACTAGCTCATTTTTCCTTGTTACAGACAATGCTTTGC CAACTCTCTTCAAAAAGTATATGCAAGTCAGTGCAGATCATGCACGCAAATACGGTGGCACTGGTCTAGGTCTTGCAATATGCAAGCAACTGGTGGAACT GATGGGAGGGCAACTAACTGTGACGAGTCGAGTGAACCATGGCTCTACATTTACATTTGTGTTACCATACAAAGTATCACCAGTTTGTGATTCTTGTGAT GATACAGATGACCTGTCCGACATGACTGATACTGATACCGCTACCGAGGATGAAACTGCTGGTTTCTTTCAGTTCCAACCGCGGACTTTGGGCTCCCTAT TCTTATCTAATGGCCCCATTAGAATACCTAAATTGGTTCCAAGTACCTTTGGTAATAATACTAGTTCTCACACACTCGGTGGGTTCATCGAGGACGAAAA TGCACTCCCATCCAGATGTAAAGAGCCAACTTCTGTTGGGGATGTCTGTTCTTCTGTGGTTGAAGTTGCAGAGAAAGCATCCGAACCTGAAAGTTCATTC GGTCAGTGTCGGATAGCTGATAATGGACACACATCTAGTGTAAGCAAGCAGTAA
AA sequence Show only first row Show all	>Lus10020115 pacid=23142042 polypeptide=Lus10020115 locus=Lus10020115.g ID=Lus10020115.BGIv1.0 annot-version=v1.0 MESVDVIEDMEMEIEALPSMWPDDINSEKPYNVEKPGGEQDMLEEVTITVDDPCVVDFKHLDELNNYTDRGSSQLAHLMKHWEYQQANAVRLLREELDIL SRQREEVELKKLEIIENFRFQEDSCGGDKRPISILDDANMEIYERIPRKKYDGFVVQSNRVDQLDVESDTVGYWKARAGNLEMLLDASAHREQILMEKLQ ETIKSLERESSPVEELSQILKRADNFLHFVLQNAPVVIGHQDNELKYRFIYNHFPSLHEQDILGKTDVEIFNGAGVKESQDFKREVLEKGLPAKREITFE TELFGLKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSS TKLDREQRNLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGRIADDVPIEIIGDVLRIRQILTNLISNAI KFTHEGKVGIDLYVVSDPEVNHQKVPVDQSTANGQKEEKCTSTSQSCNGHQNGFHDDKHGDDDPRTLDNGSTTDREDEKEECHIPETTVWLRCDVYDTGI GIPGTDISDSVPLPPSQDSDDTSSFFLVTDNALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNHGSTFTFVLPYKVSPVCDSCD DTDDLSDMTDTDTATEDETAGFFQFQPRTLGSLFLSNGPIRIPKLVPSTFGNNTSSHTLGGFIEDENALPSRCKEPTSVGDVCSSVVEVAEKASEPESSF GQCRIADNGHTSSVSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	0	1
					Lus10024121 [exp]	1.0	0.9714
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	2.4	0.9685
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	2.8	0.9695
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	3.3	0.9399
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	3.7	0.9385
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	4.9	0.9627
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	5.3	0.9424
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	5.5	0.9399
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	5.5	0.9557
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10015386 [exp]	5.7	0.9215

Compare expression of checked genes

Lus10020115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.