Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24640 613 / 0 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 587 / 0 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 394 / 1e-125 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 367 / 3e-117 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 360 / 9e-112 UBP16 ubiquitin-specific protease 16 (.1) AT5G57990 231 / 3e-65 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 216 / 4e-61 UBP25 ubiquitin-specific protease 25 (.1) AT5G46740 180 / 8e-48 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 163 / 2e-42 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 127 / 7e-32 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026918 [exp] 1239 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 398 / 6e-126 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10036607 [exp] 248 / 6e-71 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 247 / 1e-70 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10015893 [exp] 219 / 9e-65 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10013726 [exp] 222 / 3e-63 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 219 / 2e-62 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10032623 [exp] 208 / 2e-56 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 206 / 2e-56 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009500 [exp] 746 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 705 / 0 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 392 / 2e-125 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 396 / 3e-124 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 393 / 5e-123 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.001G378900 [exp] 386 / 3e-122 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G107500 [exp] 239 / 1e-67 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 238 / 3e-67 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.003G092400 [exp] 214 / 2e-59 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G394600 [exp] 211 / 3e-59 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10020116 pacid=23141971 polypeptide=Lus10020116 locus=Lus10020116.g ID=Lus10020116.BGIv1.0 annot-version=v1.0 ATGCATGTCGGTGGAATTCGGGTGGATCTGAATTGGTTCCTTCAATTTCTATTCGCTCTCTTCCTAATTGCTGGGGGATTGTTGTACCTGGTTAAGAACA CGGCGTCGAGGTACTTCGAAGTCGACGCCAGTTTTGAAAGTGCTGGGGGCATTGCTGATCGGAATCGCGCTGCACCGGTGATTACAATGGAGTCGTCTGA TGTTTCTTCTTTTTGTGATAATTGTGGCAAGTCCGGGAAGAAGAGATGCTCTCGTTGCAAATCCGTTCGATACTGTTCAACTGGATGCCAACAAGCGCAT TGGACATCTGATCATAAGTTAAAATGCAATGACTTAAGTAAAAGGAATTCGTCACAGATCAGACAACCCAATTGTGCTAAACGATTTTCTGGTATTGCAT TGGTTCTTGATGGTGAGGCTTCAAAGCGTTTTAAGAAGCCTGAGAAGGTACTCTTTCCATATGAGGAATTTATTAAATTATACAATTGGGACAAACCTGG ATTTCCTCCTTGTGGGCTCTTAAATTGTGGGAACAGTTGCTTTGCCAATGTGGTTCTGCAATGCCTGACATACACACGTCCATTGGTCGCATACCTGTTG GAGAAAGGCCATCACAGAGAGTGCAGACGTAATGACTGGTGCTTTCTGTGCGTTCTTGAGTGCCATGTTGAAAGAGCCAGCCAAAGTTCACAGCCCTTTT CCCCTATTAACATACTCTCCCGCTTACCTAATATTGGCGGTAACCTTGGCTATGGGAGGCAAGAAGATGCGCATGAATTCATGAGGTTTGCCATTGACAC AATGCAATCGGCATGCCTTGATGAATTTGGTGGAGAAAAAGCAGTCGAGCCTGCAGCCCAAGAGACAACCCTTGTTCAACATATATTTGGTGGTCACCTG CAATCTCAGGTGATGTGTACCAAATGCAGCAATATTTCAAATCAGTTTGAAAACATGATGGACTTAACTGTTGAAATTCATGGAGATGCCACTTCTTTGG AGGAATGTCTTGATCAATTCACGGCGAAGGAATGGCTTCAGGATGACAACATGTACAAATGCGACAGTTGCAATGACTATGTCAAGGCATGGAAGCGTCT TACAATACGAAGGGCTCCAAACATTCTTACTATTGCTTTGAAAAGATTTCAGAGTGGGAGATTTGGGAAACTTAACAAGAGGATAAATTTTCCAAAATTG TTAGATCTTAGTCCATACATGAGCAAAGGAGATGGTACAGATATATACAAGCTTTATGCTGTCGTTGTCCACGTTGATATGCTAAATGCATCATTTTTTG GTCATTACATCTGTTATATCAAGGATCTTCAGGGGGACTGGTTCAGATTTGACGACTGCAAGGTTACAAATGTTGAGTTGGACGAGGTACTCTCTCAAGG AGCTTACATGCTTTTATATAGCAGAGTTTCTGCTCGACCATCATGTCTTAGAGATATCACACCTCCAGAGGAGCTGCAAGCTATCAGGAAGGAAACAGAT ACTTGTACGGCTGAAAATGGTGAAGCAGCGTTGGCAAATGGGCCAAGCACCTCAGGATGCCTCCAATCCGAGAGTAATGGTGATGTTGTAAATGGAGGAT CCTTTGATGTCACGAGCTATCATTCAAGCTCAGCCATTGCCGGATTTGGGTATTTCCAAGAAAGATCATCTTCTGCAAAGGACTGTACTACTAACAATGG AAAATCCTCCGCCATTGATAACATTAGTGCAACTGAAGATGCCGGTAATCTTGACTCGGCAGACTCTGATTGTGCTATTCCAGAGGCGGTTTCAAATTGC GAACTCAATGTTTCCACAGCTATGGACGTAGTGGGAGAACGAGTAGGCGAGTCAAGTTCTGACGCGGTGATGGAGGATACTATTGAACCTAACGGAAATC TGCATTCATTGTCTGGTGAAGCGCAGTCGACCAGGAATGATTGTCGGAAACGAGAGTCATCCTTGCACGATTCAGATGAGGATGATAGAAATGGAGCGAC AAGAGCCGGAGCAACAGAATGTTATTGA
AA sequence Show only first row Show all	>Lus10020116 pacid=23141971 polypeptide=Lus10020116 locus=Lus10020116.g ID=Lus10020116.BGIv1.0 annot-version=v1.0 MHVGGIRVDLNWFLQFLFALFLIAGGLLYLVKNTASRYFEVDASFESAGGIADRNRAAPVITMESSDVSSFCDNCGKSGKKRCSRCKSVRYCSTGCQQAH WTSDHKLKCNDLSKRNSSQIRQPNCAKRFSGIALVLDGEASKRFKKPEKVLFPYEEFIKLYNWDKPGFPPCGLLNCGNSCFANVVLQCLTYTRPLVAYLL EKGHHRECRRNDWCFLCVLECHVERASQSSQPFSPINILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSACLDEFGGEKAVEPAAQETTLVQHIFGGHL QSQVMCTKCSNISNQFENMMDLTVEIHGDATSLEECLDQFTAKEWLQDDNMYKCDSCNDYVKAWKRLTIRRAPNILTIALKRFQSGRFGKLNKRINFPKL LDLSPYMSKGDGTDIYKLYAVVVHVDMLNASFFGHYICYIKDLQGDWFRFDDCKVTNVELDEVLSQGAYMLLYSRVSARPSCLRDITPPEELQAIRKETD TCTAENGEAALANGPSTSGCLQSESNGDVVNGGSFDVTSYHSSSAIAGFGYFQERSSSAKDCTTNNGKSSAIDNISATEDAGNLDSADSDCAIPEAVSNC ELNVSTAMDVVGERVGESSSDAVMEDTIEPNGNLHSLSGEAQSTRNDCRKRESSLHDSDEDDRNGATRAGATECY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	0	1
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	1.0	0.9388
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	4.7	0.8575
AT3G14750			unknown protein		Lus10038143 [exp]	4.9	0.8692
AT5G50840			unknown protein		Lus10040383 [exp]	5.1	0.8772
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	6.5	0.8729
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	6.9	0.8600
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	7.7	0.8567
AT4G27510			unknown protein		Lus10004528 [exp]	7.7	0.8590
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	8.1	0.8689
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	9.6	0.8387

Compare expression of checked genes

Lus10020116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.