Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31600 439 / 5e-156 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT4G32272 94 / 7e-22 Nucleotide/sugar transporter family protein (.1.2) AT3G17430 65 / 1e-11 Nucleotide-sugar transporter family protein (.1) AT1G21870 56 / 1e-08 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G48230 50 / 1e-06 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G77610 49 / 2e-06 EamA-like transporter family protein (.1) AT5G25400 47 / 8e-06 Nucleotide-sugar transporter family protein (.1) AT2G25520 47 / 1e-05 Drug/metabolite transporter superfamily protein (.1) AT4G32390 47 / 1e-05 Nucleotide-sugar transporter family protein (.1) AT5G11230 45 / 3e-05 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026922 [exp] 515 / 0 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10038090 [exp] 95 / 4e-22 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 80 / 1e-16 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10017759 [exp] 58 / 3e-09 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10018339 [exp] 58 / 4e-09 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033058 [exp] 57 / 6e-09 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017115 [exp] 54 / 5e-08 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017141 [exp] 52 / 3e-07 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 51 / 4e-07 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009400 [exp] 451 / 2e-160 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G270700 [exp] 449 / 8e-160 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.006G255400 [exp] 103 / 6e-25 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 96 / 1e-22 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 96 / 3e-22 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.008G214300 [exp] 60 / 7e-10 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 56 / 2e-08 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G071700 [exp] 55 / 2e-08 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.005G196500 [exp] 45 / 4e-05 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 45 / 5e-05 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10020119 pacid=23142056 polypeptide=Lus10020119 locus=Lus10020119.g ID=Lus10020119.BGIv1.0 annot-version=v1.0 ATGGAGAATCGCATTGAGACCGACCCAAGTTCGGCTCTGAGTTTGGTTGCGGCGCTGTCGTATGGGGTTTCTTCAATGGCTATGGTATTCATCAACAAGG CTATCATCATGCAGTATTCTCACTCTATGACACTCCTCACTCTCCAACAAGTGGCTACGGCTTTGCTTATACACGTCGGTAGGAATATGGGATATACGAA ATCTAGGGGACTCACTCTCCAAACGGCCAAGAGACTTCTCCCTGTTTCATTGTTTTACAATGCTAATGTTGCCTTTGCTCTGGCTAGCTTGAAAGGGGTT AATATTCCCATGTATATTGCAATCAAGAGGCTCACTCCTCTTGCTGTGCTCATTGCTGGCTTCTTTGCTGGCAAGGGAAGACCTTCAACTCAGGTGACTC TTTCGGTGCTACTGACTGCTGGAGGAGTAGTAATTGCGGCACTTGGAGATTTTTCCTTCGACGTGTTTGGTTATGGCTTGGCCTTTATCTCTGTGTTCTT CCAGACAATGTACCTTGTTTTAGTGGAGAAGTCTGGTGCAGAAGATGGACTTTCTTCAGTAGAGATTATGTTCTACAACAGCTTTTTGTCTCTACCGTTT TTGGCATTCCTCATCATAGTTACTCGAGAATTTCCAGACTCTTTGGTATTATTAATTGCAAAGAGTAATTCCATGTCATTTTTGGTGATACTCATTCTTT CTTTGGTGATGGGAATTGTTCTCAACTACACCATGTTCCTATGCACGATTGTCAACTCAGCTCTTACAACGACCATAGTAGGTGTGCTGAAAGGTGTTGG ATCCACGACGCTTGGATTCTTCTTACTTGGCGGGGTGAAGGTGCATGGTTTGAACGTGACCGGTTTGGTGATCAACACGGCTGGTGGGGTGTGGTATTCT TACGCCAAATATCGACAACGGAGAAGCAGGCCACCTAAGCTAACAACAGACGTGGAGGCACATGGGAAGTGA
AA sequence Show only first row Show all	>Lus10020119 pacid=23142056 polypeptide=Lus10020119 locus=Lus10020119.g ID=Lus10020119.BGIv1.0 annot-version=v1.0 MENRIETDPSSALSLVAALSYGVSSMAMVFINKAIIMQYSHSMTLLTLQQVATALLIHVGRNMGYTKSRGLTLQTAKRLLPVSLFYNANVAFALASLKGV NIPMYIAIKRLTPLAVLIAGFFAGKGRPSTQVTLSVLLTAGGVVIAALGDFSFDVFGYGLAFISVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPF LAFLIIVTREFPDSLVLLIAKSNSMSFLVILILSLVMGIVLNYTMFLCTIVNSALTTTIVGVLKGVGSTTLGFFLLGGVKVHGLNVTGLVINTAGGVWYS YAKYRQRRSRPPKLTTDVEAHGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	0	1
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	1.0	0.7970
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	5.3	0.7909
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	6.9	0.7610
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	7.5	0.7364
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	7.7	0.7577
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	10.4	0.7260
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	12.5	0.7405
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	14.1	0.6945
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	17.2	0.7550
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	19.2	0.6980

Compare expression of checked genes

Lus10020119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.