Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24610 845 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 796 / 0 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G14870 741 / 0 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 717 / 0 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT2G28260 672 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT5G57940 634 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 632 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT1G19780 627 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G30560 621 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G01340 614 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026924 [exp] 1301 / 0 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10042434 [exp] 965 / 0 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 961 / 0 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10023203 [exp] 837 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10015510 [exp] 834 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 833 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10039415 [exp] 719 / 0 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10039486 [exp] 717 / 0 AT5G14870 985 / 0.0 cyclic nucleotide-gated channel 18 (.1) Lus10002363 [exp] 701 / 0 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097600 [exp] 840 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.018G009200 [exp] 820 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 725 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 717 / 0 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.009G010700 [exp] 673 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G106100 [exp] 641 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.015G019100 [exp] 614 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 611 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.001G043900 [exp] 608 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.002G170000 [exp] 607 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020122 pacid=23141962 polypeptide=Lus10020122 locus=Lus10020122.g ID=Lus10020122.BGIv1.0 annot-version=v1.0 ATGGAGCTGAAGAAAGAGAATGTTTTCAATTTCTTAGAACCTCAAAAGGCTCTGCCTTTACCAACTCATAAATCATCTGTGTTGAAAGCTCCGACGGCAA GTATAAGAAAAGTTCCCAATTCTGTGAGGTTTAAGGATTTCCATCAGAATGAAATTGTTGATCCAGGAAGTGAAATCTTCCTGCAGTGGAACAGGGCTTT CCTCTTCTCTTTTCTGCTGACACTATTCGTTGATCCGTTGTTCTTTTATCTCCCAACCATCATCCAAGCAGAAGGTTCAACTTGTATGGCTATTGACTCG AAGCTAGGGATCAGCGTGACGGTTTTCAGAACCATTGCAGATGTTTCTTACCTGATGAACATAGTTTTTAAGTTCAGGACTGCTTATGTATCTCGCAGTT CAAGAGTTGTTGGTAGAGGTGAACTTATTAAGGATCCTGAATTGATTGCGTGGCGTTATTTAGGATCCGATTTCTTCATTGATTTCATCGCAGTATTGCC TCTTCCTCAGATAATGATATGGTTTGTGATTCCAGTGATCAAAACAAGAGAGTCAGATTACACCAACAACGCCCTTGTTCTTGTTGTTCTGCTGCAGTAC ATACCCAGATTGTATCTCATCTTCCCATTAAGTTCACAGATAATCAAAGCCGCGGGAGTTGTCACTGAAACTGCTTGGGCTGGTGCTGCATACAATATCA TCTTATACTTGTTGGCCAGTCATGTGATTGGGTCAGTTTGGTATTTGTGTTCGACAGAACGGTATGCAACGTGCTGGAAATCTGTCTGCCAAAGAGATTT CGGAAGTCAAACACCTTGCTTGTCGTCTTACTTGGTCTGCAGGAATCTGGAGAAACCTGATCGTAAGATATGGGCAGAGAGTACCAGAGTGTTCAGCAAG TGTGATCCAAGCAAGTCTGATGACCCTAGTGCATTCGACTACGGAATGTTCTCGAATGCTTTGTCAAAGCAGGTTCCTTCTGCAACCTTCATTGAGAAGT ATTTGTATTGCCTATGGTGGGGCATGCAAAACTTGAGTTCCTATGGCACAAATTCATCAACTACTACATTCCTTGGAGAAACTATCTTTGCCATAATTGT ATCTATAGTGGGTCTGGTTCTCTTTGCTCATTTCGTTGGAAACATACAGACATACCTGAAATCCATCACAGCAAGGCTTGAAGAATGGCGTCTGAAGAGG AGAGACACAGAAGAGTGGATGAGACATCGCCAACTCCCTGAAAACCTGAGAGAACATGTGAGGAGTTTCGTTCAGTATAAGTGGCTAGCAACTCGTGGTG TTGACGAAAAGGCCATCTTGCGGCAATTGCCTGCTGATCTACGCCGAGACATTCAGCGCCACCTTTGTTTGGACCTTGTTCGACGGGTTCCTTTGTTCTC GCAAATGGATGATCAGCTACTAGAGGCCATGTGCGAGCGATTGGTGTCATCGCTGGTTACGCAAGGGACGTACATTGTTAGGGAAGGCGATCCAGTAACC GAGATGTTGTTTGTTATAAGAGGGAGGCTAGAGAGCTCCACAACAGATGGCGGGAGGTCAGGTTTCTTCAACTCAATAGCACTGAGACCTGGAGACTTCT GTGGCGAGGAGCTCCTCGGTTGGGCGTTGCTTCCAAACTCGAACGATAGCCTGCCATCTTCGACCAGAACAGTGAAAGCAATGGAAGAAGTAGTAGAGGC GTTTGCATTGGGTGCAAATGACCTCAAGTTTGTTGCTAACCAGTTTAGACGCCTCCACAGTAAGAAGCTGCAGCACACTTTGCGATTGTATTCGCACCAT TGGAGGACATGGGGTGCTTGTTTCATTCAAACCTCGTGGCGTCGATTCAAGAGGAGGAGGATGGCAAAGAACCTGAGCATGTCAGAGTCAACGTCGTCGT TTAGAATGGTCAACGAGGAGTACTTGGGTGATGAAACTACATGTACTCGTTCAGAACCAAAGCAGATGATGGTTATGAAGAGGCTGGCTCAACAGTTTGT TCACGATGATGTTGAAATGCCTATGCTGGAAAAGCCTGAAGAGGCAGATTTCACTGTAGAGGCAAGTGGCAGGGACAGGACTAAGGTGTTACATTATTCT TGTAATTGA
AA sequence Show only first row Show all	>Lus10020122 pacid=23141962 polypeptide=Lus10020122 locus=Lus10020122.g ID=Lus10020122.BGIv1.0 annot-version=v1.0 MELKKENVFNFLEPQKALPLPTHKSSVLKAPTASIRKVPNSVRFKDFHQNEIVDPGSEIFLQWNRAFLFSFLLTLFVDPLFFYLPTIIQAEGSTCMAIDS KLGISVTVFRTIADVSYLMNIVFKFRTAYVSRSSRVVGRGELIKDPELIAWRYLGSDFFIDFIAVLPLPQIMIWFVIPVIKTRESDYTNNALVLVVLLQY IPRLYLIFPLSSQIIKAAGVVTETAWAGAAYNIILYLLASHVIGSVWYLCSTERYATCWKSVCQRDFGSQTPCLSSYLVCRNLEKPDRKIWAESTRVFSK CDPSKSDDPSAFDYGMFSNALSKQVPSATFIEKYLYCLWWGMQNLSSYGTNSSTTTFLGETIFAIIVSIVGLVLFAHFVGNIQTYLKSITARLEEWRLKR RDTEEWMRHRQLPENLREHVRSFVQYKWLATRGVDEKAILRQLPADLRRDIQRHLCLDLVRRVPLFSQMDDQLLEAMCERLVSSLVTQGTYIVREGDPVT EMLFVIRGRLESSTTDGGRSGFFNSIALRPGDFCGEELLGWALLPNSNDSLPSSTRTVKAMEEVVEAFALGANDLKFVANQFRRLHSKKLQHTLRLYSHH WRTWGACFIQTSWRRFKRRRMAKNLSMSESTSSFRMVNEEYLGDETTCTRSEPKQMMVMKRLAQQFVHDDVEMPMLEKPEEADFTVEASGRDRTKVLHYS CN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	1.4	0.9707
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10014869 [exp]	3.0	0.9347
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	3.5	0.9454
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	4.6	0.9185
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	8.1	0.9078
					Lus10030774 [exp]	8.2	0.9334
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	8.9	0.9204
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	9.8	0.9204
					Lus10033677 [exp]	10.6	0.8584
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	11.0	0.8738

Compare expression of checked genes

Lus10020122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.