Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 301 / 4e-97 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 300 / 1e-96 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT3G53160 293 / 8e-94 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT5G14860 292 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 290 / 7e-93 UDP-Glycosyltransferase superfamily protein (.1) AT2G16890 290 / 8e-93 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G36800 289 / 2e-92 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 288 / 4e-92 UDP-Glycosyltransferase superfamily protein (.1) AT1G10400 282 / 6e-90 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 281 / 1e-89 UGT73B3 UDP-glucosyl transferase 73B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026927 [exp] 885 / 0 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10026926 [exp] 770 / 0 AT2G15480 300 / 1e-96 UDP-glucosyl transferase 73B5 (.1.2) Lus10022222 [exp] 314 / 2e-102 AT5G14860 505 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10022220 [exp] 304 / 2e-98 AT2G16890 497 / 4e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022221 [exp] 283 / 4e-90 AT2G16890 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10023893 [exp] 279 / 1e-88 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014084 [exp] 278 / 2e-88 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 277 / 9e-88 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10016268 [exp] 275 / 7e-87 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009000 [exp] 585 / 0 AT2G15490 323 / 6e-106 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272600 [exp] 582 / 0 AT2G15490 300 / 1e-96 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G008900 [exp] 578 / 0 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.006G272500 [exp] 578 / 0 AT2G15490 318 / 1e-103 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.005G036100 [exp] 400 / 1e-135 AT2G15490 309 / 3e-100 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G099032 [exp] 303 / 5e-98 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 301 / 2e-97 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 301 / 3e-97 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G348100 [exp] 298 / 3e-96 AT2G16890 521 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G120600 [exp] 296 / 5e-95 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10020124 pacid=23141986 polypeptide=Lus10020124 locus=Lus10020124.g ID=Lus10020124.BGIv1.0 annot-version=v1.0 ATGTCGGCTAACGACCATGTAATAATATTCCCATTCATGGCACAAGGCCACACTCTCCCTCTCCTAGACCTCGCCAAGGCATTCGCCCTCAACCACAATC TCAACGTCACAATCATCACAACTCCTTCCAACGCCAAATCAATCTCCGATTACATCTCTCCACTTCACTTCCCAACTATCTCCCTCTCCGTAAACCCATT CCCTCCGATCGACGGCCTTCCTCCAGGAACAGAGAACACTTCCCAACTCCCGTCCATGCAAAAATTCTACGTCCCTTTCCTCCACGCCACCAAGAAGCTC AAGCAACCCTTCGAGCAAATCCTGGCCACTCATCGTCCTCGCCCTCTGTGCGTAATCTCCGACTTCTTCCTCGGATGGACGCTCGACACTTGCCGAGCGT TCGGTATCCCGCGCTTGGTCTTCCACGGAATGAGCGTCTGCTCCTTGGCTACTATTAAATCCTTATGGTGCGCCCCTCCGGAGCTGAAAATGATGATGAT GTCACCGGATAAAAATCAGCCGTTGGATCTACCCAACATGAAGCTTCCGTTTGCTTTAACGGCTGCAGATGTGCCGGCAGAGGTCATGGTCAACTCCAGT GGTGAAGAGGATCCGCTGACTAAATATATAGAGGAAGTCGGGTGGGCTGATGCCAACAGCTGGGGAATTATAGTCAACAGCTTCCATGAGGTGGAGCTTA GCCATACTGAGTCGTTTGAGAAGTTTTATTTTAATGGGGCCAAGACTTGGTGTTTAGGCCCACTCTTTTTGTGCGAGGGTAAAAAGGGAACAATAAATCC AAATGCACATGCAAATTCCTCTGCTGGCTCGGATGAGCTGAGCCGATGGCTCGACGAGCAAGTGGCCCCCGGTTCGGTGATTTACGTTTCTTTCGGTTCC CAAGCCGACATGTCCAGCTCTCAGCTCGACGAAGTGGCCTACGGTCTCGAAGCGTCTGGGTGTCGGTTTGTTTGGGTGGTCCGGTCAAAGTCGTGGATGG TTCCTGACGGTTTGGAGGAGAAGATAAAAGAAAAGGGGTTGGTTGTAAGGGAATGGGTTGACCAGCGTCGAATATTGGACCACCGGTCGGTAGGTGAATT TCTGAGTCATTGCGGGTGGAACTCGATTTTGGAGAGCGTTTCGGCTGGGATGCCGATTTTGGCTTGGCCGATGATGGCCGAACAGGCGCTCAACGCCAAG CTGATCGTGGAAGGGCTGGGAGCCGGGTTGCGATTGGAGAAGAATAAGGATGATAGTGTTAATATGTTCAAGCGAGAAGCCATTTGTGAAGGGGTGAGGG AGCTGATGGGTGGTGGAAAGGGTCGTCATGCTAAGGAGAGAGCTCAAGCTTTGGGTCGTGTGGCTCATAAGGCAGTGCAGAAAGGCGGCTCGTCTCATGA AGCCATGAGTCGGTTGGTCAACGAGTTGCGCCAGTGTTAG
AA sequence Show only first row Show all	>Lus10020124 pacid=23141986 polypeptide=Lus10020124 locus=Lus10020124.g ID=Lus10020124.BGIv1.0 annot-version=v1.0 MSANDHVIIFPFMAQGHTLPLLDLAKAFALNHNLNVTIITTPSNAKSISDYISPLHFPTISLSVNPFPPIDGLPPGTENTSQLPSMQKFYVPFLHATKKL KQPFEQILATHRPRPLCVISDFFLGWTLDTCRAFGIPRLVFHGMSVCSLATIKSLWCAPPELKMMMMSPDKNQPLDLPNMKLPFALTAADVPAEVMVNSS GEEDPLTKYIEEVGWADANSWGIIVNSFHEVELSHTESFEKFYFNGAKTWCLGPLFLCEGKKGTINPNAHANSSAGSDELSRWLDEQVAPGSVIYVSFGS QADMSSSQLDEVAYGLEASGCRFVWVVRSKSWMVPDGLEEKIKEKGLVVREWVDQRRILDHRSVGEFLSHCGWNSILESVSAGMPILAWPMMAEQALNAK LIVEGLGAGLRLEKNKDDSVNMFKREAICEGVRELMGGGKGRHAKERAQALGRVAHKAVQKGGSSHEAMSRLVNELRQC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	0	1
					Lus10042299 [exp]	2.2	0.8227
AT4G18425			Protein of unknown function (D...		Lus10013974 [exp]	6.5	0.7392
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	7.3	0.8039
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	10.4	0.7427
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	13.3	0.7937
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	15.5	0.7373
					Lus10007080 [exp]	19.2	0.6952
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	20.2	0.7451
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	28.5	0.6965
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	38.4	0.7237

Compare expression of checked genes

Lus10020124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.