Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 60 / 2e-12 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT2G37640 41 / 6e-05 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G45960 40 / 0.0001 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT3G55500 40 / 0.0001 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 40 / 0.0002 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G45970 40 / 0.0002 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT2G03090 39 / 0.0006 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020126 [exp] 167 / 4e-54 AT2G18660 57 / 7e-11 plant natriuretic peptide A (.1) Lus10020127 [exp] 102 / 1e-28 AT2G18660 50 / 1e-08 plant natriuretic peptide A (.1) Lus10026929 [exp] 90 / 6e-24 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10020129 [exp] 66 / 1e-14 AT2G18660 44 / 2e-06 plant natriuretic peptide A (.1) Lus10020130 [exp] 62 / 9e-13 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10042436 [exp] 59 / 3e-12 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10020128 [exp] 61 / 7e-12 ND 48 / 6e-07 Lus10026930 [exp] 59 / 5e-11 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10026931 [exp] 54 / 3e-09 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 55 / 3e-10 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 52 / 3e-09 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.018G098200 [exp] 51 / 5e-09 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 48 / 9e-08 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 46 / 5e-07 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.018G029100 [exp] 45 / 1e-06 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 44 / 4e-06 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 43 / 1e-05 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.009G141400 [exp] 43 / 2e-05 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.003G087000 [exp] 41 / 0.0001 AT4G17030 183 / 3e-57 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10020125 pacid=23141996 polypeptide=Lus10020125 locus=Lus10020125.g ID=Lus10020125.BGIv1.0 annot-version=v1.0 ATGGCTTACAACTACTCATCTGCATCTCTCCTCCTGCTCGCAATCTTACTTGTGCAGCAGCTCTCTTTCTGGCATTCCGCAGCTACCATGTTCTATGGAA CTGCCAGCTTTACCCAACATCCTTACCATTCCTCGTGCACCCATGGTACAGCCGCCAACCACAAGACGTTTGCGGCGGTACCAAGCTGGGTGTACCAAGA TGGTGCGGCTTGCGGGGCCAAATACAAAATTACTTGCACCGGCAAAGCATGTCTTCCACATGGACCGACTATAACGGTCACTGTTGCCGACGTCTGCATA CCAGACAAGCCTTGCGAGCCTTGCTCTGACTTCGTCCTGTCGAAAGAAACGTTCAGAACAATTGCAGGCCTCGATGCAGCCACTGTTGGGATTTACTATG AATTGTAA
AA sequence Show only first row Show all	>Lus10020125 pacid=23141996 polypeptide=Lus10020125 locus=Lus10020125.g ID=Lus10020125.BGIv1.0 annot-version=v1.0 MAYNYSSASLLLLAILLVQQLSFWHSAATMFYGTASFTQHPYHSSCTHGTAANHKTFAAVPSWVYQDGAACGAKYKITCTGKACLPHGPTITVTVADVCI PDKPCEPCSDFVLSKETFRTIAGLDAATVGIYYEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020125 [exp]	0	1

Compare expression of checked genes

Lus10020125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.