Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 55 / 4e-10 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT2G40610 39 / 0.0008 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020125 [exp] 167 / 4e-54 AT2G18660 63 / 2e-13 plant natriuretic peptide A (.1) Lus10020127 [exp] 102 / 2e-28 AT2G18660 50 / 1e-08 plant natriuretic peptide A (.1) Lus10026929 [exp] 85 / 1e-21 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10020130 [exp] 70 / 4e-15 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10026930 [exp] 70 / 5e-15 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10020128 [exp] 69 / 4e-14 ND 48 / 6e-07 Lus10020129 [exp] 64 / 2e-13 AT2G18660 44 / 2e-06 plant natriuretic peptide A (.1) Lus10026931 [exp] 64 / 1e-12 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10020131 [exp] 54 / 2e-09 AT2G18660 59 / 2e-11 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 62 / 1e-12 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 60 / 5e-12 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G179300 [exp] 54 / 1e-09 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 47 / 4e-07 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 44 / 3e-06 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G252200 [exp] 43 / 1e-05 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 42 / 2e-05 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G155000 [exp] 41 / 5e-05 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.019G057500 [exp] 42 / 7e-05 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G249500 [exp] 41 / 7e-05 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10020126 pacid=23142066 polypeptide=Lus10020126 locus=Lus10020126.g ID=Lus10020126.BGIv1.0 annot-version=v1.0 ATGGCGCACAACCACTCATCATCAGCACCTCTCCTGCAGCTTGCACTCTTACTTGTGCAGCTCTCTATCTGGCGTTCCGGAGCTACCATGTTCTACGGAA CTGCTAGCTTTACCCGACCTCCTTACCATTCCTCGTGCACTGATGGTATCACAACCAACTACGAGACGTTTGCGGCAGTGCCAAGCTGGGTGTACCAAGA TGGTGTGGCTTGCGGGACCAAATACAGAGTTACTTGCGCTGACGAAGCATGCCTCGCGAATGGACCAACGTCTATAACGGTCACTGTTGCCGACGTCTGT ACACCAGACAAGCCTACCGAGCCTTGCCCAACCTTGGTGCTGTCGGAGGAAACGTTCCAAACATTTGCAGACACTGATGCAGGCATTATTGCCATTTACT ATGAACTAATGAGAACCCTTGGACAAGATTCTGACTCCTCCTCTGTCAGAGACAACAACCCNNNNNNNNNTTGA
AA sequence Show only first row Show all	>Lus10020126 pacid=23142066 polypeptide=Lus10020126 locus=Lus10020126.g ID=Lus10020126.BGIv1.0 annot-version=v1.0 MAHNHSSSAPLLQLALLLVQLSIWRSGATMFYGTASFTRPPYHSSCTDGITTNYETFAAVPSWVYQDGVACGTKYRVTCADEACLANGPTSITVTVADVC TPDKPTEPCPTLVLSEETFQTFADTDAGIIAIYYELMRTLGQDSDSSSVRDNNXXXX

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020126 [exp]	0	1

Compare expression of checked genes

Lus10020126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.