Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 46 / 4e-07 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT1G12560 45 / 2e-06 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT1G69530 45 / 3e-06 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 43 / 2e-05 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT3G45960 41 / 9e-05 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT3G45970 40 / 0.0001 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT2G40610 39 / 0.0005 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G20190 38 / 0.0008 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020125 [exp] 113 / 5e-33 AT2G18660 63 / 2e-13 plant natriuretic peptide A (.1) Lus10020126 [exp] 111 / 5e-32 AT2G18660 57 / 7e-11 plant natriuretic peptide A (.1) Lus10026929 [exp] 77 / 1e-18 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10026930 [exp] 68 / 1e-14 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10020129 [exp] 65 / 3e-14 AT2G18660 44 / 2e-06 plant natriuretic peptide A (.1) Lus10020130 [exp] 65 / 1e-13 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10042436 [exp] 54 / 3e-10 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10020128 [exp] 55 / 1e-09 ND 48 / 6e-07 Lus10020131 [exp] 50 / 3e-08 AT2G18660 59 / 2e-11 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 55 / 2e-10 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 53 / 2e-09 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 49 / 4e-08 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 45 / 7e-07 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.001G112900 [exp] 45 / 2e-06 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.018G031901 [exp] 44 / 2e-06 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 44 / 3e-06 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.001G001100 [exp] 44 / 1e-05 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.006G249500 [exp] 42 / 2e-05 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.001G401700 [exp] 41 / 8e-05 AT3G15370 348 / 2e-122 expansin 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10020127 pacid=23141974 polypeptide=Lus10020127 locus=Lus10020127.g ID=Lus10020127.BGIv1.0 annot-version=v1.0 ATGGCTTACAACCACTCATCACTATCTCTCCTCCTGCTTGCACCAATCTTACTTGTCCAGCTCTCTCATTTATGCTGTTCCCTAGCTACCAGTTACCCTG GAACTGCTAGCTTTTCCATAGCTCCGTACCGCTCTTCGTGCACCGATAGTCTCGGAGACCCCAAGACGTTCGCGGCAGTACCAGACTCGTTCTACCAAGA CGGTGCTGCTTGCGGGCAGACGTACAAAATTACTTGCGGTGGCAAAGGATGCCTCACGGATGGAATACCTGTAACGGTCACTGTGTCCGACATCTGTACA CCAGACAACGATTCCGATTCCGATTCTTGCTCCACATTCGTGCTGTCGGAAGAAACGTTCCGAACGTTCGCGGAGACTAATATCGGCGTTGTTAACGTTG CGTATGAACGGTAA
AA sequence Show only first row Show all	>Lus10020127 pacid=23141974 polypeptide=Lus10020127 locus=Lus10020127.g ID=Lus10020127.BGIv1.0 annot-version=v1.0 MAYNHSSLSLLLLAPILLVQLSHLCCSLATSYPGTASFSIAPYRSSCTDSLGDPKTFAAVPDSFYQDGAACGQTYKITCGGKGCLTDGIPVTVTVSDICT PDNDSDSDSCSTFVLSEETFRTFAETNIGVVNVAYER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020127 [exp]	0	1

Compare expression of checked genes

Lus10020127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.