Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 47 / 1e-06 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026929 [exp] 124 / 3e-35 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10020129 [exp] 123 / 1e-34 AT2G18660 44 / 2e-06 plant natriuretic peptide A (.1) Lus10026928 [exp] 104 / 2e-28 ND / Lus10007708 [exp] 74 / 3e-15 AT1G48120 42 / 2e-04 hydrolases;protein serine/threonine phosphatases (.1) Lus10032771 [exp] 72 / 7e-15 ND / Lus10020126 [exp] 68 / 8e-14 AT2G18660 57 / 7e-11 plant natriuretic peptide A (.1) Lus10020125 [exp] 61 / 2e-11 AT2G18660 63 / 2e-13 plant natriuretic peptide A (.1) Lus10026931 [exp] 62 / 9e-11 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10026930 [exp] 61 / 1e-10 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G101600 [exp] 50 / 2e-07 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.006G179300 [exp] 49 / 4e-07 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.003G218300 [exp] 46 / 3e-06 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G098200 [exp] 45 / 6e-06 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 44 / 2e-05 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.014G066300 [exp] 44 / 9e-05 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.006G176300 [exp] 42 / 9e-05 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10020128 pacid=23142040 polypeptide=Lus10020128 locus=Lus10020128.g ID=Lus10020128.BGIv1.0 annot-version=v1.0 ATGTATTTCAAACTTCATAACAAGTCCTCATCAATTCCAACAAACACATCATCAAAGTCACACACACTAGCAAATCGAATCCCTTGTCCCATTACCCTCG CCCTCACCTCACCCAGCTCACCCGCGACACGGCCGGAAACCCCATCCACTCCACCCCGGCAGTCGACACTCCCCCAATTCGGTGATCCCTTCCCTCCGAC GGTTCGACCCACACACAGCAGCAAGCATTCAGCACATGCAGCACTCCCCCGAATCCCGATTCCTTCCCTTCGAGTCTTCGACCCAGCAAGCAGAGCTGCA GCACGGGCAGCACCGCAGCAGCACTCCAGGCTCCAGGTCTTGGCGACGGCGAGCAGGTGCCAGGCAGCGGCTGGCTGCACCGTCCCCGTAGCTGAGTCGG TTAAATCGATCAGAGCCGTTTACAATGATTCCTGTTCTGGTATTGACCCAGAAAACTACATGGTCGCCGCAGTAAGCGACGAACTCATATCTGAAGGTTT CGGTTGCGGAACCAAATTCATAATAACTTGCGTGGCGAGTTCGGACAATGCATGCCTACCATCGGCACAACCTATCACGATCACTGTAGCCGATGACTGC AAACCGGAGCCGCCTCGTTACGAGAAATGCCCTACTTTCGTTCTGTCAAAACAAGTTTACTCAGCCATTGCAAACACTGATGCTGGCGTTGAACCTAGTG TTACCCTCGCGTGCTGTAGGGCGTCTCACATCCCTCCATACCATCCCCACTTATGCCATTTTTTGGAGGCTGTTGGACTCTTATCGATTGTTGATCTTGT GACCCTTTCACCGGATCCGCATCTTGAGACGGTGCGAGTGGAGGCATGGAGCGTAGGCTCGACGACCTGGGGCGTCACCCACAGATGA
AA sequence Show only first row Show all	>Lus10020128 pacid=23142040 polypeptide=Lus10020128 locus=Lus10020128.g ID=Lus10020128.BGIv1.0 annot-version=v1.0 MYFKLHNKSSSIPTNTSSKSHTLANRIPCPITLALTSPSSPATRPETPSTPPRQSTLPQFGDPFPPTVRPTHSSKHSAHAALPRIPIPSLRVFDPASRAA ARAAPQQHSRLQVLATASRCQAAAGCTVPVAESVKSIRAVYNDSCSGIDPENYMVAAVSDELISEGFGCGTKFIITCVASSDNACLPSAQPITITVADDC KPEPPRYEKCPTFVLSKQVYSAIANTDAGVEPSVTLACCRASHIPPYHPHLCHFLEAVGLLSIVDLVTLSPDPHLETVRVEAWSVGSTTWGVTHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020128 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.6	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	7.9	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	9.6	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	10.2	1.0000
					Lus10011605 [exp]	11.4	1.0000
					Lus10025268 [exp]	13.5	1.0000
					Lus10024141 [exp]	13.6	1.0000
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	14.4	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	16.7	1.0000
					Lus10013255 [exp]	17.6	1.0000

Compare expression of checked genes

Lus10020128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.