Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 69 / 2e-15 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G30380 64 / 3e-13 EXLB2 Barwin-related endoglucanase (.1) AT2G45110 49 / 5e-07 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 44 / 2e-05 EXPB6 beta expansin 6 (.1) AT1G65680 43 / 5e-05 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT3G45960 42 / 0.0002 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G38400 41 / 0.0002 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 39 / 0.001 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT1G62980 39 / 0.001 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026930 [exp] 258 / 6e-88 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10026931 [exp] 102 / 2e-26 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10042435 [exp] 83 / 3e-20 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10019978 [exp] 82 / 4e-20 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10026929 [exp] 72 / 3e-16 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10020126 [exp] 69 / 8e-15 AT2G18660 57 / 7e-11 plant natriuretic peptide A (.1) Lus10026232 [exp] 67 / 7e-14 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10042436 [exp] 62 / 5e-13 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10020125 [exp] 63 / 8e-13 AT2G18660 63 / 2e-13 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218300 [exp] 84 / 8e-21 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 76 / 5e-18 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 75 / 2e-17 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 73 / 7e-17 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.018G098200 [exp] 64 / 2e-13 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 60 / 9e-12 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 56 / 7e-10 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 54 / 1e-09 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G252200 [exp] 54 / 2e-09 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.006G249500 [exp] 54 / 2e-09 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10020130 pacid=23142035 polypeptide=Lus10020130 locus=Lus10020130.g ID=Lus10020130.BGIv1.0 annot-version=v1.0 ATGAGTAGTTTCCTGGTCGAAGCTAAGGTCCGCCGCACCCCACCATCTCCACCGGGAGCCGGAGCTCCAACTCCCACAGTAAAACCTCCTCGTCCTGGAC AAATGCGGAATGCGACGGTTGGGAGGACCGGAACTGCTTCTTTCTCCGATCCCCCTTACACTCCATCTGCATGCCTTGAGGATAAGGAGCCAAAGAGTGT AATGATTGCGGCAGCTGATCCTGCACTCTTTCGCAACGGCAAAGCTTGCGGGCAAATTTTCCAGGTGACATGCACTGGTGCTGCAGCCTCGGACGAACAA CAACAAAGCTTGACGATGAAGAAAGACCCATCTCAAATTCAGAGTCCTTGCAAGAAAGGCGGTAAGCCCGTGGCGGTGACAGTTATAGACAGTTGCTCAC CGACAGAGACAGATCCATGTCCTAGTTTGGTTTTGTCCAAAGAAGCATTTGCTGCCATCGCCAATCCTGACGCTGGTCTCATCACTATTTCCTTCCAACC GTACGTCCATACATGTTTCATTATGATGATGTTGATACCTATTAAATACTATCTATTTCCTTTATTTTGA
AA sequence Show only first row Show all	>Lus10020130 pacid=23142035 polypeptide=Lus10020130 locus=Lus10020130.g ID=Lus10020130.BGIv1.0 annot-version=v1.0 MSSFLVEAKVRRTPPSPPGAGAPTPTVKPPRPGQMRNATVGRTGTASFSDPPYTPSACLEDKEPKSVMIAAADPALFRNGKACGQIFQVTCTGAAASDEQ QQSLTMKKDPSQIQSPCKKGGKPVAVTVIDSCSPTETDPCPSLVLSKEAFAAIANPDAGLITISFQPYVHTCFIMMMLIPIKYYLFPLF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020130 [exp]	0	1

Compare expression of checked genes

Lus10020130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.