Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 52 / 6e-09 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G30380 49 / 8e-08 EXLB2 Barwin-related endoglucanase (.1) AT2G45110 50 / 1e-07 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 45 / 5e-06 EXPB6 beta expansin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026932 [exp] 220 / 6e-74 AT2G18660 58 / 3e-11 plant natriuretic peptide A (.1) Lus10042436 [exp] 102 / 1e-28 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10020130 [exp] 64 / 8e-13 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10042435 [exp] 62 / 1e-12 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026930 [exp] 62 / 7e-12 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1) Lus10026232 [exp] 60 / 2e-11 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10026929 [exp] 59 / 3e-11 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10019978 [exp] 57 / 9e-11 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10026931 [exp] 57 / 8e-10 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098200 [exp] 67 / 2e-14 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 65 / 7e-14 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.003G218300 [exp] 65 / 7e-14 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 64 / 1e-13 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 54 / 1e-09 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G176300 [exp] 53 / 2e-09 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.006G252200 [exp] 51 / 1e-08 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 49 / 7e-08 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 49 / 1e-07 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.006G155000 [exp] 40 / 0.0002 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10020131 pacid=23141994 polypeptide=Lus10020131 locus=Lus10020131.g ID=Lus10020131.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTACTACTTGTCGCCTCAGCATCAATTCTTCCTCTCTTTTACCTCTTTTGGCTGCCTTCTTCCTCGCTATCTCCTTAAGCTTCACTTCTC TTGCTTCCGCAGCTGGCAACGGAACTGCTTCCTCTTACCGCCCCGATGCTACATCAGCGTGCAAGAGCCACAACGGTTCAGCATCAATTAGTCAGACGCT GGTTGCGATGGTTCCGAAGGCAGCATTTAATAACGGAGCAGCGTGCGGGAGGATGTACAAGATTAGTTGCATCGGAGCTATAGACGAATATCCAAAAGAA CCCTGCAAACTTAATCAGTCGGTAACGGTGACCGTTGCCAATGAATGCGGCGGGGACGATTGTGCAACTTTTACATTGTCCACCGACGCTTACGCTTTAA TTTCCAAACCTGATGCTGGTCGCATTCAGATCTCTTACAGACGATATCATAAAGGACAAAAGGCCATCCAGGATAGGAATGGTACTGACACAACCTGGAA TATGATGTCTCACTGA
AA sequence Show only first row Show all	>Lus10020131 pacid=23141994 polypeptide=Lus10020131 locus=Lus10020131.g ID=Lus10020131.BGIv1.0 annot-version=v1.0 MAAATTCRLSINSSSLLPLLAAFFLAISLSFTSLASAAGNGTASSYRPDATSACKSHNGSASISQTLVAMVPKAAFNNGAACGRMYKISCIGAIDEYPKE PCKLNQSVTVTVANECGGDDCATFTLSTDAYALISKPDAGRIQISYRRYHKGQKAIQDRNGTDTTWNMMSH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	5.2	0.7687
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	6.2	0.7821
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	8.7	0.7442
AT1G23200			Plant invertase/pectin methyle...		Lus10009110 [exp]	16.8	0.7319
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	20.2	0.7709
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	22.0	0.6780
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	23.2	0.7562
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	40.5	0.7168
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	44.0	0.6997
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	44.4	0.7292

Compare expression of checked genes

Lus10020131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.