Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24580 501 / 8e-178 FAD-dependent oxidoreductase family protein (.1) AT5G24155 40 / 0.0004 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026231 [exp] 572 / 0 AT2G24580 532 / 0.0 FAD-dependent oxidoreductase family protein (.1) Lus10042437 [exp] 571 / 0 AT2G24580 540 / 0.0 FAD-dependent oxidoreductase family protein (.1) Lus10026933 [exp] 244 / 0.0004 AT2G24580 153 / 6e-43 FAD-dependent oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008700 [exp] 523 / 0 AT2G24580 569 / 0.0 FAD-dependent oxidoreductase family protein (.1) Potri.006G272800 [exp] 516 / 0 AT2G24580 585 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10020132 pacid=23142085 polypeptide=Lus10020132 locus=Lus10020132.g ID=Lus10020132.BGIv1.0 annot-version=v1.0 ATGGACCTTCACGGCCAGCAGTTCGATGTCATTGTGGTCGGAGCTGGGATCATGGGCAGCGCCGCCGCTTACCAGCTCGCCAAAACAGGCAAAACGGTAA TCCTGCTGGAACAATTCGATTTCCTCCACCACCGCGGTTCATCGCACGGCGAGTCCCGCACGATCCGAGCCGCCTACCCTGAGGACTACTACTGCGCTAT GGTCGTCGAATCGTCCCGCCTGTGGGAAGAGGCAGGGTCAGAAATTGGATACAAGGTCTACTTCAAATCCCCTCACTTGGATGTGGGACCCGCCGACGAC AAAAACCTCCTCGACATCGTTTCCAGCTGCAGGAACAATTCCATCGGATGCCGGGTCCTGAACCAACGTCAAGTGGAGGAGGAATTCACTGGCCGGGTTA AGATCCCGGAGGACTGGATCGGGGTCCATACAGATCTCGGCGGGGTAATCAAACCTACCAAGGCGGTTTCGATGTTCCAGACGCTGGCGTTTCAGAAAGG CGCGGTGTTGAGAGACCACACGGAGGTGAAGGGGATCGTTAAGGACGAGGAGCAAGGCTGCGGGGTAAGAGTGTTGATCGGCGACGGCGGCGAAATCCGG GCGGAGAAGTGTGTGATAACAGCCGGAGCTTGGACCAAGAAATTGGTTAAAAAGGTGAGCGGTATCGAGCTGCCGATTCAGCCGGTGGAGACGACCGTTT GTTATTGGAGAGTGAGAGAAGGGCACGAAGGTAAATACTCCATGAATGAGGGGGAATTTCCCACGTTTGCAGGCTACGGGGAGCTTCACTTGTACGGGAC CCCGTCGATGGAGTTTCCAGGGCTGATGAAGATAGCTGTGCATGACGGGTACCCGTGTGACCCGGATAAGCGGGTTTGGGGACCCGGAAAATCGGTGGAC GAGCTTAAGATATGGATTGAGGAGAGGTTCGGTGGGATGGTTGTCGGAGTCGGTGGACCGGAGGCAAAGCAGTCATGCATGTACTCCATGACTCCCGACG AGGACTACGTGATTGATTTCCTGGGTGGGGAGTTTGGTAAGGATGTGGTGGTGGCCGGTGGATTTTCTGGTCACGGATTCAAGATGGGACCGGCGGGAGG GGAGAGACTGTCGGGGGCATCTTTCTACGCGGGCTGTCCACGGGGAGGATAA
AA sequence Show only first row Show all	>Lus10020132 pacid=23142085 polypeptide=Lus10020132 locus=Lus10020132.g ID=Lus10020132.BGIv1.0 annot-version=v1.0 MDLHGQQFDVIVVGAGIMGSAAAYQLAKTGKTVILLEQFDFLHHRGSSHGESRTIRAAYPEDYYCAMVVESSRLWEEAGSEIGYKVYFKSPHLDVGPADD KNLLDIVSSCRNNSIGCRVLNQRQVEEEFTGRVKIPEDWIGVHTDLGGVIKPTKAVSMFQTLAFQKGAVLRDHTEVKGIVKDEEQGCGVRVLIGDGGEIR AEKCVITAGAWTKKLVKKVSGIELPIQPVETTVCYWRVREGHEGKYSMNEGEFPTFAGYGELHLYGTPSMEFPGLMKIAVHDGYPCDPDKRVWGPGKSVD ELKIWIEERFGGMVVGVGGPEAKQSCMYSMTPDEDYVIDFLGGEFGKDVVVAGGFSGHGFKMGPAGGERLSGASFYAGCPRGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	0	1
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	3.0	0.8821
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	5.0	0.8492
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	5.5	0.8698
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	6.3	0.8747
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	7.3	0.8198
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10000823 [exp]	10.8	0.8168
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	12.4	0.8297
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	12.7	0.8452
					Lus10012740 [exp]	13.6	0.8284
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10027878 [exp]	13.7	0.8299

Compare expression of checked genes

Lus10020132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.