Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 239 / 9e-73 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G12775 230 / 5e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 218 / 9e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 218 / 2e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 216 / 4e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 214 / 3e-64 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63230 206 / 4e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 212 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 210 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 211 / 1e-62 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 461 / 2e-160 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 425 / 2e-146 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 402 / 7e-137 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 374 / 3e-129 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 369 / 3e-124 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10009201 [exp] 339 / 4e-116 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10021074 [exp] 318 / 5e-107 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022861 [exp] 318 / 2e-104 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 315 / 3e-103 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046200 [exp] 290 / 2e-93 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 288 / 2e-92 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 286 / 7e-92 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 284 / 5e-91 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 283 / 8e-91 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 281 / 4e-90 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 280 / 2e-89 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 279 / 2e-89 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 280 / 3e-89 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 278 / 1e-88 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020134 pacid=23142030 polypeptide=Lus10020134 locus=Lus10020134.g ID=Lus10020134.BGIv1.0 annot-version=v1.0 ATGAATGCATGTGAAGCTGCAGCTTCAGTGTCTAGGAAAATGCAATTCGTTGGGTTGTTACATGATTCATTTGGATCCAATACACTGATTTATTGTTTGT TGGTTGTGCATTCTCAGTACTGGGCAAAAAATTTTAAATTTGGTCATCAACCTTGTGCGGTAACTTTTAATACCTTAATTGTTGGATTGTGCAAAGATGG AAAAGTTGATCATGCTGTGAAGCTTTTCGATAAGATTGTGTCTTTAAGATATCAACCGGATGTTTTCACTTATAGTTCCATTATTGATGGCCTGTGTAAG ATGGGTAAAACTAGTGCTGCTCATAGATTGCTGGAGAAAATGGAAGATGTAGGTTGTCAACCAGATGTGGTTACTTACAGTACAATTATAGATAGCCTAT GTAAGGATGGTTTGGTATCCAAAGCCGTAGATGTGTTTATCAAGATGAAGGATGAAAAGTGTTCACCAAATGTTGTCACTTACAGCTGTTTGATTCATGG TTTATGTGTTTCAAGTCGAAAGAATGAAGCTATATTGTCGTTCGGCAAAATGTTAGAAAGGGATGTCGTTCCAAATGTAGTCACCGATAACATTCTGATT GATTCGTTTTGCAAAGATGGAATGGTCCGTGAGGCTAAAGCTATAGTCAAAGTGATGATACAAAAAGGACAGCATCCGGATATCGTCACTTACAACTCAT TGCTAGATGGTATGATGATTAATGGATATTGTAAGAGTGAAAGGTTCAGTGAAGCCAAACAGTTAGTGAATAATATGCTTGAGAAGGATTTAGTTCTAGA CACTGTTACGTATACTACTCTTGTGGATGGGTTTTGCCGAGCGCGGAGGTTCCAAGATGCAGAAAAAGTTCTTAAGGAAATGTGCCATCAGGGACAGCTT CCGAATGTCGTGACATTCAACAGTTTGCTGAATGGTTGGTGCCAAATAGGTCATCTTGACAAGGCATTAGCTCTATTCCGAGAAATCAAAATTATGGACT TTGTAGGGATGGTCTGGTAG
AA sequence Show only first row Show all	>Lus10020134 pacid=23142030 polypeptide=Lus10020134 locus=Lus10020134.g ID=Lus10020134.BGIv1.0 annot-version=v1.0 MNACEAAASVSRKMQFVGLLHDSFGSNTLIYCLLVVHSQYWAKNFKFGHQPCAVTFNTLIVGLCKDGKVDHAVKLFDKIVSLRYQPDVFTYSSIIDGLCK MGKTSAAHRLLEKMEDVGCQPDVVTYSTIIDSLCKDGLVSKAVDVFIKMKDEKCSPNVVTYSCLIHGLCVSSRKNEAILSFGKMLERDVVPNVVTDNILI DSFCKDGMVREAKAIVKVMIQKGQHPDIVTYNSLLDGMMINGYCKSERFSEAKQLVNNMLEKDLVLDTVTYTTLVDGFCRARRFQDAEKVLKEMCHQGQL PNVVTFNSLLNGWCQIGHLDKALALFREIKIMDFVGMVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	0	1
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	2.0	0.8663
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10013176 [exp]	3.0	0.8581
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	3.2	0.8720
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	4.9	0.8460
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	5.3	0.8524
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	6.2	0.8278
AT3G56140			Protein of unknown function (D...		Lus10009845 [exp]	6.3	0.8483
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	11.3	0.8436
					Lus10004492 [exp]	16.8	0.7653
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	17.2	0.8435

Compare expression of checked genes

Lus10020134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.