Plant FIBer expression Database

Lus10020135 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039384
[exp]
91 / 5e-23 ND /
Lus10035139
[exp]
73 / 1e-15 AT2G16676 41 / 1e-04 unknown protein
Lus10022598
[exp]
60 / 5e-11 ND 36 / 0.006
Lus10033213
[exp]
59 / 1e-09 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2)
Lus10019378
[exp]
44 / 2e-05 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10020135 pacid=23142060 polypeptide=Lus10020135 locus=Lus10020135.g ID=Lus10020135.BGIv1.0 annot-version=v1.0
ATGCTCTACGGCGGTTACCTGTGGTGGGCAGTTTCATGCCAGTTCCTACCTTCCCACGTTGTTGGATATTCGCTGGTTGCCAGCGGTTACCATGTCTTTG
CTATATATAATATGCGGCTTCTCCGTCTAGCCTCCTGTCTATATGGGTTGGGTCCTCCCAGCTACAACCTTCTCATGACGAGTGAAGGGACGGTGTTTAT
GTTTTCTTCTGCAGCAGTTGTTGTGGCCGACGATCGAGCCGCCACTAGTCTCCTTGCACGGTTCTTATATGCCAAACCAAAATCGGTGAATCTCATCCGC
GTATCCTTCTCCCGGAAGTACGACCTTCTGCGCAAACTGACGGTCATCGATGTGACTCATGGCCTCCATCAACTGTTCTTTGCGGATAAGGACTTTATGC
AGCAGGGGTTGCTAGTGGTGTGTTTACGATGCGGTCATCTTGGACATCATTTCAACACTTGTTCGGTTGCTGATCTCCCTCCTCGCAACCCGAATTCACG
AGGGTCGTGGATGGCGATTCCAACGGGGACGTACCGGAAGGTTGATTCATTCACCCTGCAACCGGAGGGTCGGGAGTATGCTCTAGCGTCAGTTGCGGCC
ATGGTGCGTCGCGCGGCGGCCTCGACTCCGGCACGTTTCACTACAAGGAAAATTGACGTCGGTCGCGGATCCGTTGTGACGGATAATTTCCGTGTCAGCC
GTTGTGGCGGAAAACAGGCGCCAGACGCGAATAATTATCCGCGACAACTGTTGTGA
AA sequence
>Lus10020135 pacid=23142060 polypeptide=Lus10020135 locus=Lus10020135.g ID=Lus10020135.BGIv1.0 annot-version=v1.0
MLYGGYLWWAVSCQFLPSHVVGYSLVASGYHVFAIYNMRLLRLASCLYGLGPPSYNLLMTSEGTVFMFSSAAVVVADDRAATSLLARFLYAKPKSVNLIR
VSFSRKYDLLRKLTVIDVTHGLHQLFFADKDFMQQGLLVVCLRCGHLGHHFNTCSVADLPPRNPNSRGSWMAIPTGTYRKVDSFTLQPEGREYALASVAA
MVRRAAASTPARFTTRKIDVGRGSVVTDNFRVSRCGGKQAPDANNYPRQLL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10020135
[exp]
0 1
AT1G17810 BETA-TIP beta-tonoplast intrinsic prote... Lus10040652
[exp]
8.9 0.7481
Lus10022394
[exp]
11.7 0.7409
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10024360
[exp]
13.6 0.7204
AT1G28220 ATPUP3 purine permease 3 (.1) Lus10008212
[exp]
23.8 0.7121
Lus10039965
[exp]
31.2 0.6869
AT4G18010 AT5PTASE2, IP5P... INOSITOL\(1,4,5\)P3 5-PHOSPHAT... Lus10011041
[exp]
41.3 0.6606
AT1G71140 MATE efflux family protein (.1... Lus10008911
[exp]
46.2 0.6718
AT2G24190 SDR2 short-chain dehydrogenase/redu... Lus10008413
[exp]
47.4 0.6120
AT2G29040 Exostosin family protein (.1) Lus10016532
[exp]
50.5 0.6643
AT2G02360 ATPP2-B10 phloem protein 2-B10 (.1) Lus10025660
[exp]
55.0 0.6553

Lus10020135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.