Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31550 365 / 1e-126 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 351 / 2e-121 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT4G24240 177 / 1e-52 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 175 / 1e-51 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT5G28650 166 / 1e-48 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT3G04670 165 / 2e-48 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT2G23320 164 / 2e-48 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT2G34830 112 / 8e-28 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G29280 107 / 4e-27 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT4G01250 107 / 6e-27 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026936 [exp] 510 / 0 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10010053 [exp] 194 / 2e-59 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10041600 [exp] 181 / 2e-54 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10024864 [exp] 174 / 9e-52 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 172 / 5e-51 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10042538 [exp] 171 / 9e-51 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10033857 [exp] 169 / 1e-49 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10021999 [exp] 167 / 2e-49 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10014745 [exp] 167 / 7e-49 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008500 [exp] 363 / 1e-125 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.006G072400 [exp] 303 / 2e-102 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2) Potri.018G139300 [exp] 290 / 2e-97 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.002G123300 [exp] 201 / 5e-62 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 192 / 2e-58 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.002G043500 [exp] 177 / 5e-53 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 176 / 4e-52 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.007G047400 [exp] 172 / 6e-51 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G219500 [exp] 171 / 1e-50 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.005G141400 [exp] 170 / 2e-50 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10020136 pacid=23142067 polypeptide=Lus10020136 locus=Lus10020136.g ID=Lus10020136.BGIv1.0 annot-version=v1.0 ATGGCGGTGGACACGATGAGATTTAGTAAGATGGACGATCAGATCGCAATACAGGAAGCAGCAACTCAAGGCTTGAAGAGCATGGAGCACCTGATCGGAG TTATGTCTCGCCACCAGCCGTCGAATCACGTCGATTACACGGACATCACTGAGCACACCGTCTCCAGATTTAAGAAAGTCATCTCCCTCCTCAATCGCAC TGGCCACGCCCGCTTCCGCCGTGGTCCTGCTCATCTTCCCCCCGTCGCCGCCTCATCGCCTCCGTCTTCGTCTTCTCCTCCTCCTAGGGCGGTCATCCAA GTGGCTCCTCCGGTTCCAGTCTCGATCCCGGCGCCCTCCAGCTTCGTGCAGCCGCAGCCGCAGAGTTTGACTCTTGACTTCACTAAACCTAACATATTCG CCTCTAATTCCAAGAGCGTTGAGCTGGAGTTCACCAAGGATAGCTTTAGCTGCTCCTCCAACTCTTCCTTTATGTCCTCCGCAATAACCGGCGACGGAAG CGTTTCAAACGGAAAGCTGGGATCGTCGATCTTCCTATCACCGCCAACAGCCTCCACCGGAAAGCCGCCTCTCTCGTCGGCTCCATACAGCAAGAAGAGG TGTCACGAGCACGTCCACTCCGAAGATCTGTCCGGAAATTTCTCCGGCTCCAACAGCGGCAAGTGCCATTGCTCTAAGAGACGAAAAAATCGGGTGAAGA AAACAATTCGGGTCCCGGCGATAAGCTCGAAGATCGCTGATATCCCAGCGGACGAGTATTCTTGGAGGAAGTACGGTCAAAAGCCCATCAAGGGCTCTCC TTACCCGAGGGGATATTACAAGTGTAGCACGATGAGGGGGTGTCCGGCGAGGAAGCATGTGGAGAGGGCGACGGACGATCCAGCGATGCTGATCGTCACC TACGAAGGCGAGCACCGCCATGCCCAGCCGGCGGTGGCTCCACTCGCCGGGGTAGGGGTGGTTGACTTGTCGACGTAG
AA sequence Show only first row Show all	>Lus10020136 pacid=23142067 polypeptide=Lus10020136 locus=Lus10020136.g ID=Lus10020136.BGIv1.0 annot-version=v1.0 MAVDTMRFSKMDDQIAIQEAATQGLKSMEHLIGVMSRHQPSNHVDYTDITEHTVSRFKKVISLLNRTGHARFRRGPAHLPPVAASSPPSSSSPPPRAVIQ VAPPVPVSIPAPSSFVQPQPQSLTLDFTKPNIFASNSKSVELEFTKDSFSCSSNSSFMSSAITGDGSVSNGKLGSSIFLSPPTASTGKPPLSSAPYSKKR CHEHVHSEDLSGNFSGSNSGKCHCSKRRKNRVKKTIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERATDDPAMLIVT YEGEHRHAQPAVAPLAGVGVVDLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	2.2	0.9559
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	2.6	0.9656
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	3.5	0.9516
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	4.2	0.9649
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	4.2	0.9578
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	12.6	0.9571
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	12.7	0.9491
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10019159 [exp]	13.6	0.9235
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	14.1	0.9279
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	16.4	0.9225

Compare expression of checked genes

Lus10020136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.