Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58590 164 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 123 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 119 / 5e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 115 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 115 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26630 113 / 4e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 113 / 1e-28 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 112 / 2e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 112 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G38010 111 / 3e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026937 [exp] 392 / 2e-133 AT3G58590 715 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 125 / 5e-33 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 124 / 3e-32 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 122 / 9e-32 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 118 / 2e-30 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 117 / 5e-30 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 113 / 9e-29 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10024199 [exp] 113 / 1e-28 AT3G09040 1017 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 113 / 1e-28 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091000 [exp] 235 / 4e-73 AT3G58590 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 119 / 1e-30 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 119 / 1e-30 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 117 / 5e-30 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G093000 [exp] 115 / 2e-29 AT1G69350 832 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 113 / 7e-29 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G466066 [exp] 112 / 2e-28 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 112 / 2e-28 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 112 / 2e-28 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 112 / 2e-28 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020138 pacid=23142045 polypeptide=Lus10020138 locus=Lus10020138.g ID=Lus10020138.BGIv1.0 annot-version=v1.0 ATGCCAGTCAAGAGCTTGACCACATGGAATTCAATGATCTCTTGCTTTGCTAATCACGGCTTGGTTGAAGATATTATGATTCTGTTTCGTGACCTTTTAA GCAAGGAAAGTATGATTCTGTTTCGTGACCTTTTAAGCAAGGAAAGTATATTATCTGAAGGCACGTTTGTTGGTCTTTTGTCCGGATTAGTATGCGATCA AGATTTGGGATTTGGCCAGCAAGTGCATGGTTTAGCTATTAAAAATGGGTTTATGAGCAAGGTTCCAATTGCCAACAGTCTTGTTAATATGTATGTGAAA TGTGGCAGCATGTCTCTGACCGAGAAAATGTTTCAGGATTTAAAGAACAAGGATATTGTGACGTGGAACACCCTGATTGGTGGATTAGTAAGAAATGGCA ATGCCGACAAAGCAGCGGAGCTTTTCAAGAAACTCTCTAAAGATCTTCTCAGGCCTAATCAGGCGACATTTGTTAATCTCATCCAGTCATATACTGCTCT ACAAATTCCGATGTTTGGGGAAGCTGTTCATGCTTTCATAATCATGCATGCTTCTGAAATGGATGCTTATTTTGGTAGTGCTCTAGTTGACTATTATGCT AAGTGCAACAAGTTGGATGATGCATACAACTGTTTTCTTGAGATACGTGAAAAGAATGTAGTCTGA
AA sequence Show only first row Show all	>Lus10020138 pacid=23142045 polypeptide=Lus10020138 locus=Lus10020138.g ID=Lus10020138.BGIv1.0 annot-version=v1.0 MPVKSLTTWNSMISCFANHGLVEDIMILFRDLLSKESMILFRDLLSKESILSEGTFVGLLSGLVCDQDLGFGQQVHGLAIKNGFMSKVPIANSLVNMYVK CGSMSLTEKMFQDLKNKDIVTWNTLIGGLVRNGNADKAAELFKKLSKDLLRPNQATFVNLIQSYTALQIPMFGEAVHAFIIMHASEMDAYFGSALVDYYA KCNKLDDAYNCFLEIREKNVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	0	1
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	8.5	0.7848
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020139 [exp]	10.5	0.7305
AT3G47840			Tetratricopeptide repeat (TPR)...		Lus10019098 [exp]	11.0	0.6786
AT3G50430			unknown protein		Lus10022468 [exp]	11.7	0.7845
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020137 [exp]	14.1	0.6937
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	14.8	0.7311
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	16.6	0.7294
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	18.9	0.7762
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042748 [exp]	20.5	0.6952
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	21.1	0.7588

Compare expression of checked genes

Lus10020138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.