Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58590 138 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G52850 79 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 74 / 9e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20770 71 / 9e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G41080 70 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G50420 68 / 7e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 68 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 67 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 67 / 2e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 66 / 4e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026937 [exp] 282 / 5e-92 AT3G58590 715 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027366 [exp] 75 / 4e-16 AT2G40720 328 / 7e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007840 [exp] 70 / 3e-14 AT5G55740 579 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038431 [exp] 70 / 3e-14 AT4G20770 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 69 / 8e-14 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022125 [exp] 68 / 9e-14 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10016772 [exp] 67 / 1e-13 AT3G50420 256 / 7e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003324 [exp] 67 / 2e-13 AT2G41080 597 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 67 / 2e-13 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091000 [exp] 172 / 1e-50 AT3G58590 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G131800 [exp] 80 / 5e-18 AT3G50420 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 75 / 3e-16 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 71 / 8e-15 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 71 / 1e-14 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 71 / 1e-14 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G129500 [exp] 71 / 1e-14 AT5G09950 1001 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G144401 [exp] 67 / 1e-14 AT2G34400 164 / 9e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G064301 [exp] 66 / 2e-14 AT2G34400 170 / 7e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G068600 [exp] 69 / 5e-14 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020139 pacid=23142061 polypeptide=Lus10020139 locus=Lus10020139.g ID=Lus10020139.BGIv1.0 annot-version=v1.0 ATGGGAGAGTTCGTTAAATGCCACCAGCGGCTGCTAAGTCTGCTAGAAGCCAGCTCAATAGTTCCTTCTCTTAGTGCGACTAAATGTCTTCACGCACTCT CCATCAAACTTTACGACCCTTACTGCTCCCAAGCCACCTTTTTGCACAACAACATCATCTCTTTATACGCGTCGGTCAGGGAGTTGTGGACTGCACGTAA GGTGTTTGACAGAATGCCGCAGAGGAACACGGCGTCCTACAATTCTATGATTTGTTGTTACAGCAGATTTGACTACTTGGATGATGCTTGTAGTACTCTT AATCAGATGATGGCATCTGGATTTAGGCCTAATCAGTTCACTCTTGGGGGTCTCTTGTCGTGTGCGTCAATGGATATAAGTCTTGGGGTCAGATTGCAGG GACTAGCAATGAAAAGCGGGTTGTTCTCTGTTGATGCTTTCGTGGGGACTTCTTTGTTGGGCTGTTTGGAAGGTCGGATTATTTAG
AA sequence Show only first row Show all	>Lus10020139 pacid=23142061 polypeptide=Lus10020139 locus=Lus10020139.g ID=Lus10020139.BGIv1.0 annot-version=v1.0 MGEFVKCHQRLLSLLEASSIVPSLSATKCLHALSIKLYDPYCSQATFLHNNIISLYASVRELWTARKVFDRMPQRNTASYNSMICCYSRFDYLDDACSTL NQMMASGFRPNQFTLGGLLSCASMDISLGVRLQGLAMKSGLFSVDAFVGTSLLGCLEGRII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020139 [exp]	0	1
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	10.5	0.7305
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	20.6	0.7768
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	21.1	0.7670
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	29.3	0.7078
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10016661 [exp]	34.5	0.7643
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	34.9	0.7426
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	37.5	0.7309
AT5G19485			transferases;nucleotidyltransf...		Lus10026802 [exp]	38.4	0.7004
AT4G04180			P-loop containing nucleoside t...		Lus10040913 [exp]	41.3	0.7115
AT3G50430			unknown protein		Lus10022468 [exp]	59.3	0.7222

Compare expression of checked genes

Lus10020139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.