Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 721 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 717 / 0 EFR EF-TU receptor (.1) AT3G47580 710 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 704 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 670 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 431 / 6e-135 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 435 / 1e-134 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 425 / 3e-130 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 417 / 4e-128 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 415 / 9e-128 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026938 [exp] 1646 / 0 AT5G20480 735 / 0.0 EF-TU receptor (.1) Lus10010199 [exp] 839 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 821 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 816 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 808 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 799 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 795 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 789 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 781 / 0 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273001 [exp] 926 / 0 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 883 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 871 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 851 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 851 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 849 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 838 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 837 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 833 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 827 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020140 pacid=23141956 polypeptide=Lus10020140 locus=Lus10020140.g ID=Lus10020140.BGIv1.0 annot-version=v1.0 ATGCGACCTTTGTTCTTGCTTCTCTGCTGTTTCCTGTCCATGGTGGGAGGAACCACCACCAACCAGACGGATGAACAAGCTTTGCTCGATTTCAGGTCCA AAATATCCTCAGACCCACCTGGGATCTTCACCTCCTGGAACTCTTCCCTCCACTTCTGTCAATGGACTGGAGTTACTTGCAACCTTAAAACCCAAAGAGT CATCCAGCTTACCCTCAGCTCTTCCTCCCTCCATGGCACAATCCCCCAATCCATCTCCAACCTTACTTCTCTCCAGCAACTCCTTCTCGACAACAACACC TTGTCCGGCCATATACCATCCGGAATCGGCAGCTTGTCAAACCTCCAGATTCTCGATCTTTACTCGAATTCGCTCACCGGCCAAATCCCAAACACCATAT CCAACTGTTCCAAGCTCACTGTCCTCTATCTCGGAAGGAACAAGCTAGTGGGTAAAATTCCTGATACATTCGGTATTTCGTTATCATACCTCCGGATTCT CGGTATCAGTTTCAACAACCTGACAGGGGGACTACCTTCATCTTTGGGCAATGTTTCCTCTTTGCAATCAGTTTCCACAACTTTCAACCATCTCGGAGGC ACCATCCCCGAATCGTTGGGCAACCTCGACAAGCTCGATTTCTTCTCGATGGGAGCGAACAAGCTGACAGGAACGATCCCATCGTCAATCTACAACATTT CTTCGCTGAGCGTGCTTTGTTTCCCCGAGAATCAGCTCCACGGAGCTATTCCGCCTGATGTGGGGAATGTTCTTCCGAATCTTATCGAGCTTAACGTTGG CGACAATCGGTTCACCGGAACAATTCCTGCTTCGCTATCTAACGCCACCAACTTGGAGAGGTTTACGATCGCCATCAACGGAATCTCCGGAACCCTGCCT TCGCTGGATAAGCTTCATAACCTTTGGTGGTTGAGTATTTCGACTAACTTGCTCGGAACTGGATTACAAGGTGATCTCGATTTTTTTTCCACACTCGGAA ACCTTACGAGTTTACGACTGGTGTCGATAAGTTACAACAACTTCGGTGGATCGTTGCCGACATCTGTGGTGAATCTTACTCAGCTTGAGATTCTGGCAAT GGGACTTAATAATATATCTGGAAACATTCCTGTCGGAATGTCAAATCTGAAGAACTTGGAGTGGTTAGATATGGCAGACAATCAGTTCTCAGGAAACATT CCTGAAGAACTCGGAATGTTGACGAATTTGAAGAAGTTGTATCTTCAGGGAAACCGATTTTGGGGGAGTAAGATCCCATCTTCTTTAGGGAATTTAACTC AGCTGACACATCTCTACATGCATCAGAGCTCCATCGAAGGTATCATTCCTCCAAGCTTGGGCAACTGTCGGAATCTATTGTCACTCGATCTCGACGGGAA CAATCTGAGTGGAGAAATCCCAGGAGAGATTTTCAACATTCAATCTTTGACTATCTATTTGGGCTTGGCAGATAACAACCTGTCGGGTTTTTTACCTACA CAAGTAGGGAATCTGAAAAATCTCGGAATCCTGAATGTTTCATATAACCTGTTGTCAGGAGAAATTCCTGCCGGAATCGGTAGATGCGTCAGACTAGAAA CTCTTCTGTTACGGAAAAATTCCTTCCAGGGAGTCATTCCTTCGTCGATGAGTTCGTTGAAAGGGATTCAGATCCTGAGCGTGGCTTACAACAATCTGTC GGGCGAAATACCGGAGTTTATGGGGCAGTTTCAGTCGTTGAAGGTTTTGAATCTTTCTTTCAACAACTTCCAAGGAAGTGTGCCTGTTTTCAGAAACTCT ACGTCAGCTTCAGTTTCAGGAAACAGTAAACTATGTGGCGGAATTCCTGAATATAAATTGCCACCTTGCAGGACCAGCAGTACTAAATCGAAAAGAATAC TCTCGATTGCTGAGATCGCCACAATCGTAGTGTGCGGAGTTGTATTCATCGCTCTAATTCTATCTTGTACGCTGCTCTTCTTTGTCAAGAGGAAAAAAGT GGCGCCAGATGATCTGGAATGTTCAGCAAACCAAATGATGACTTACCATAGTCTGAGGAGAGCCACTGAAGAGTTTTCTCCTGGAAATCTACTCGGAACA GGAAGTTTCGGTTCGGTCTACAAAGGGATAGATCAAAGAAATGGAAGAACAATTGCAGTGAAAGTGCAGAACCTTCTAAACCCGGCAGCTTCCAAGAGCT TTAGAGCAGAATGTGAGGTTTTAAGAACTGTCAGACACCGGAATCTGGTGAAGCTACTGACTGCTTGTTCCGGTGTCGATGGTGCCGGGAACGAATTCAA GGCCTTGGTTTACGAATTCATGGCGAACGGAAGTCTGGATGAATGGTTGTACAATCCTGATGAGTCTGGAACTTGTCCAAGAAGGTTGAAGTTGGTTCAA AGGTTGAACATTGCTATTGATGTGGCGAGTGGTCTGGAGTATCTACATTGTGGATTGAAAACTCCGATAGTGCATTGTGATCTGAAGCCGAGCAATGTTC TTCTGAATGATGAAATGACGGGAGTGGTGGGGGATTTCGGGTTGGCCAGGCTATTCCCGGAAGCTAATGTTAATAGTTATTCCTTATCGTCCAGCAGCTT TGGAGTCAGGGGAACTATCGGTTACACAGCACCAGAATATGGAATGGGGAATGAGGTCTCAAGTAATGGAGATGTGTACAGCTACGGGATGCTCCTGCTA GAGATGTTGACAGGGAAAAGACCCACCGATGAACTGTTCAAGGAAGGACTAAATCTGCATCGTTATGGGGATGTGGGTTCCTGGAAGCAAGCTAGGAAGA TATTGGACAGAGTCGTAGTGGAGGAGATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCATCAGCCACAGAGATTACAGCTTCTCAACTTAAGGA ATGCGTAGTTTCGATGCTTAGAGTTGGCGTAGCCGCTTCTTTGGAGTCGCCTGGTGAGCGGATGAGCATCAGTGATGTTGGAAGGGAGCTGTCTGAAATT AGAGAAAAGCTTCTAGGAAGTAATTATATGATCAGTGTGAGCCAGAAATGGTAA
AA sequence Show only first row Show all	>Lus10020140 pacid=23141956 polypeptide=Lus10020140 locus=Lus10020140.g ID=Lus10020140.BGIv1.0 annot-version=v1.0 MRPLFLLLCCFLSMVGGTTTNQTDEQALLDFRSKISSDPPGIFTSWNSSLHFCQWTGVTCNLKTQRVIQLTLSSSSLHGTIPQSISNLTSLQQLLLDNNT LSGHIPSGIGSLSNLQILDLYSNSLTGQIPNTISNCSKLTVLYLGRNKLVGKIPDTFGISLSYLRILGISFNNLTGGLPSSLGNVSSLQSVSTTFNHLGG TIPESLGNLDKLDFFSMGANKLTGTIPSSIYNISSLSVLCFPENQLHGAIPPDVGNVLPNLIELNVGDNRFTGTIPASLSNATNLERFTIAINGISGTLP SLDKLHNLWWLSISTNLLGTGLQGDLDFFSTLGNLTSLRLVSISYNNFGGSLPTSVVNLTQLEILAMGLNNISGNIPVGMSNLKNLEWLDMADNQFSGNI PEELGMLTNLKKLYLQGNRFWGSKIPSSLGNLTQLTHLYMHQSSIEGIIPPSLGNCRNLLSLDLDGNNLSGEIPGEIFNIQSLTIYLGLADNNLSGFLPT QVGNLKNLGILNVSYNLLSGEIPAGIGRCVRLETLLLRKNSFQGVIPSSMSSLKGIQILSVAYNNLSGEIPEFMGQFQSLKVLNLSFNNFQGSVPVFRNS TSASVSGNSKLCGGIPEYKLPPCRTSSTKSKRILSIAEIATIVVCGVVFIALILSCTLLFFVKRKKVAPDDLECSANQMMTYHSLRRATEEFSPGNLLGT GSFGSVYKGIDQRNGRTIAVKVQNLLNPAASKSFRAECEVLRTVRHRNLVKLLTACSGVDGAGNEFKALVYEFMANGSLDEWLYNPDESGTCPRRLKLVQ RLNIAIDVASGLEYLHCGLKTPIVHCDLKPSNVLLNDEMTGVVGDFGLARLFPEANVNSYSLSSSSFGVRGTIGYTAPEYGMGNEVSSNGDVYSYGMLLL EMLTGKRPTDELFKEGLNLHRYGDVGSWKQARKILDRVVVEEIEEEEEEEEEEESSATEITASQLKECVVSMLRVGVAASLESPGERMSISDVGRELSEI REKLLGSNYMISVSQKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	0	1
AT5G61820			unknown protein		Lus10017316 [exp]	2.0	0.9671
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	4.2	0.9649
AT5G61820			unknown protein		Lus10017315 [exp]	5.2	0.9612
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	7.9	0.9520
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	9.8	0.9588
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	11.0	0.9567
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	11.2	0.9522
					Lus10041676 [exp]	13.5	0.9478
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10031349 [exp]	14.7	0.9427
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	15.0	0.9442

Compare expression of checked genes

Lus10020140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.