Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24550 108 / 6e-28 unknown protein AT5G24890 97 / 1e-23 unknown protein AT4G31510 82 / 3e-18 unknown protein AT5G21940 58 / 1e-09 unknown protein AT3G43850 57 / 4e-09 unknown protein AT3G03170 40 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026939 [exp] 325 / 5e-112 AT2G24550 116 / 4e-31 unknown protein Lus10038265 [exp] 50 / 2e-07 AT5G56550 66 / 9e-14 oxidative stress 3 (.1) Lus10025837 [exp] 50 / 4e-07 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10038073 [exp] 46 / 1e-05 AT3G43850 50 / 4e-07 unknown protein Lus10009793 [exp] 43 / 0.0001 AT5G24890 51 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008200 [exp] 129 / 1e-35 AT5G24890 131 / 3e-37 unknown protein Potri.006G273100 [exp] 122 / 4e-33 AT5G24890 129 / 1e-36 unknown protein Potri.018G048100 [exp] 62 / 5e-11 AT5G21940 110 / 4e-29 unknown protein Potri.006G219800 [exp] 58 / 2e-09 AT5G21940 135 / 3e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020142 pacid=23141972 polypeptide=Lus10020142 locus=Lus10020142.g ID=Lus10020142.BGIv1.0 annot-version=v1.0 ATGGATGTCCTGATGGGTCCAACCTTCAGCATCGACGTTTCCGCCGCTCAGGCGGCTGATTACTCAGCTCATTCGCCGAATAACCAGCGGCGAGTGTACC TACAACATAGGGTTTCAGCTGTGGTACTGGAACAAGGAGGAGAGATGGAGGAGAATGCTAAAGCTGGTACGATCTCGCTCTCCAGCATGGATCGGAAGGG CCTTGGGATGGTTAGATCTGGGAAATCTTTCGAAGATTCCTCTGATAGTAGTTCTTCAGTTGGCGCTCCCGATGACAGCGAGGAGGAGGAAGAAGAAGGA GAAGAAAGTAACAGCGCTTCGTCCTCGTCCTCTTCGTCTATAAGGAAAAGCCTCTGCTCCCTCGACGCCTTGGAAGACTCTCTGCCTGTAAAGAGGGGAT TGTCAAATTACTTCACCGGGAAATCGAAATCGTTCGCTAGCCTGGCAGATGCGAGCTTGGCGGTGAGTAAAGCGAAAGATCTGGAGAAACCGGAGCATCC GTTCAACAAGCGGAGGAGAATTCTGATGGCTAATAAGTGGACGAGGAGATCCTCTTTCTATAGTTGGACAAACCCGAAATCCATGCCGCTGCTCACCCTA AACGAGGATGACGACGATGAGGCGAAAGAAGGAGAAGAAGTTGAAGAAGAAGAAGAAGAAGAAGAGCATGGGGACGGTGGGCGGGAAAGCATGACGTCGT CGTCGTCATCGGATAAGGATGAAGAAGAGGAGAATGAAGATCGGAAGCGGCGAGGAGGAACGGCGGTTGGTCAAAGGAAACCACTGCAGGAGAGGAAATT CAACAACAGTTTCAAGTGCCATAGCTGTTTCTCCCTCACAGATCTGCAACAGCAACAACGGCTTCACCAAAATCTGCAGTGA
AA sequence Show only first row Show all	>Lus10020142 pacid=23141972 polypeptide=Lus10020142 locus=Lus10020142.g ID=Lus10020142.BGIv1.0 annot-version=v1.0 MDVLMGPTFSIDVSAAQAADYSAHSPNNQRRVYLQHRVSAVVLEQGGEMEENAKAGTISLSSMDRKGLGMVRSGKSFEDSSDSSSSVGAPDDSEEEEEEG EESNSASSSSSSSIRKSLCSLDALEDSLPVKRGLSNYFTGKSKSFASLADASLAVSKAKDLEKPEHPFNKRRRILMANKWTRRSSFYSWTNPKSMPLLTL NEDDDDEAKEGEEVEEEEEEEEHGDGGRESMTSSSSSDKDEEEENEDRKRRGGTAVGQRKPLQERKFNNSFKCHSCFSLTDLQQQQRLHQNLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24550			unknown protein		Lus10020142 [exp]	0	1
AT2G24550			unknown protein		Lus10026939 [exp]	1.7	0.9611
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	2.4	0.9471
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	3.5	0.9428
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	4.0	0.9480
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	5.1	0.9293
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	5.5	0.9355
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	6.7	0.9393
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	6.8	0.9205
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	6.9	0.9295
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	6.9	0.9330

Compare expression of checked genes

Lus10020142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.