Plant FIBer expression Database

Lus10020143 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10700 203 / 5e-67 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026940
[exp]
322 / 2e-107 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G008000
[exp]
209 / 2e-69 AT5G10700 201 / 5e-66 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0305 PTH2 PF01981 PTH2 Peptidyl-tRNA hydrolase PTH2
Representative CDS sequence
>Lus10020143 pacid=23141945 polypeptide=Lus10020143 locus=Lus10020143.g ID=Lus10020143.BGIv1.0 annot-version=v1.0
ATGGCGACACAGCTGCTGCTATTCTCGCCGTGTCGTTTAACTACAGCATCCTCCATTCCTCGCCTCTTCTCGGCCAAAATTAGGGCAACTCATTTCACTC
TCCCCCTCCGCTCACTCCAATCCAAGTCAATGAGCGGCGGCGCGCCGGAAGTGGGTTCAGATCCTTCGAAGAATGGCGAGGAGGAAGAAGTGTTAGTGCA
GTACGTGGTGTTACGGCGAGACCTAATCGACACATGGCCGACGGGAAGCGTGGTGACGCAAGGTTGCCACGCCGCCGTAGCCGCCATATGGTCCAACAAG
GACGACGATCACACGCTCCGGTACTGCGGACCTGACAACATCGATTCGATGCACAAGGTGACACTGGAGGTGAAAGGGGAGACGCAGATGTTGAATTTGG
CTGAGAAGCTTAGGAATGGTGGGATTGCTCACAAGCTCTGGATTGAACAGCCTGAGAACATACCAACCTCTATTGCCACTAAGCCTTACCCTAAATCCAA
AGTGGCTTCATTTTTCAAGAAGTTGAAGCTCTGCAAGTGA
AA sequence
>Lus10020143 pacid=23141945 polypeptide=Lus10020143 locus=Lus10020143.g ID=Lus10020143.BGIv1.0 annot-version=v1.0
MATQLLLFSPCRLTTASSIPRLFSAKIRATHFTLPLRSLQSKSMSGGAPEVGSDPSKNGEEEEVLVQYVVLRRDLIDTWPTGSVVTQGCHAAVAAIWSNK
DDDHTLRYCGPDNIDSMHKVTLEVKGETQMLNLAEKLRNGGIAHKLWIEQPENIPTSIATKPYPKSKVASFFKKLKLCK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10700 Peptidyl-tRNA hydrolase II (PT... Lus10020143
[exp]
0 1
AT2G45520 unknown protein Lus10015859
[exp]
2.4 0.8996
AT3G53500 RSZ32, RS2Z32, ... arginine/serine-rich zinc knuc... Lus10009067
[exp]
3.2 0.8986
AT1G22140 unknown protein Lus10025627
[exp]
5.9 0.8731
AT4G17510 UCH3 ubiquitin C-terminal hydrolase... Lus10026940
[exp]
6.9 0.8864
AT1G72175 RING/U-box protein with domain... Lus10009529
[exp]
7.1 0.8442
AT3G16380 PAB6 poly(A) binding protein 6 (.1) Lus10038840
[exp]
8.5 0.8777
AT5G61830 NAD(P)-binding Rossmann-fold s... Lus10032525
[exp]
8.8 0.8884
AT1G19600 pfkB-like carbohydrate kinase ... Lus10024268
[exp]
8.9 0.8612
AT3G54480 SKP5, SKIP5 SKP1/ASK-interacting protein 5... Lus10039556
[exp]
10.8 0.8619
AT5G03430 phosphoadenosine phosphosulfat... Lus10013826
[exp]
11.8 0.8781

Lus10020143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.