Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17510 349 / 3e-123 UCH3 ubiquitin C-terminal hydrolase 3 (.1) AT5G16310 86 / 1e-19 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT1G65650 76 / 6e-16 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026940 [exp] 442 / 3e-153 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1) Lus10031062 [exp] 92 / 6e-22 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10035444 [exp] 89 / 1e-20 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10042047 [exp] 79 / 8e-17 AT1G65650 484 / 8e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081000 [exp] 386 / 7e-138 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1) Potri.017G075200 [exp] 82 / 4e-18 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.004G130400 [exp] 81 / 7e-18 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF01088 [flax] [poplar] Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence Show only first row Show all	>Lus10020144 pacid=23142018 polypeptide=Lus10020144 locus=Lus10020144.g ID=Lus10020144.BGIv1.0 annot-version=v1.0 ATGACCACCATTGACGAGGTTCCTTCTGCTAAGAGGTGGCTTCCTCTTGAAGCTAATCCTGATGTTATGAACCAGTTCATTTGGGGCCTAGGCCTTCCGG AGAATCAGGCAGAGTGCTATGATGTCTATGGCTTGGATGAGGAACTCCTGGCTATGGTTCCACAGCCTGTCCTTGCAGTCATCTTTCTCTATCCGCTAAC TCCACAGTCTGAACAAGAGAGACTGCAGCAGGAAGGTGTTGTTAAGGAACCTAACGAGAAGGTTTATTTCATGAAACAAACTGTTGGCAATGCCTGTGGA ACCATAGGCCTTCTTCATGCTGTAGGGAACATCAGGTCCAACATCAATCTGCTTGAGGGATCATTCTTAGACCGACTCTTCAAATCAACAGCCAGCATGG ACCCAATGCAGCGTGCAAGGTTCCTTGAGAATGACCGAGAAATGGAAACTGCTCATTCTGTTGCTGCTACAGGCGGTGAAACTGAGGCATCAGACGATGT GAACACTCATTTTATCTGCTTTGTCTGTGTGGATGGTGAACTGTATGAGCTTGATGGGAGAAAGGCAGGACCCGTATTGCATGGCCCATCATCACCGGAC ACCTTGCTACAGGATGCAGGTAAAATGATAAAAGGGATGATCCAGAAGAATCCAGAGTCTCTTAACTTCAACGTAATGGCTATTTCCAAGAAAGATGGGG CTGCTTGA
AA sequence Show only first row Show all	>Lus10020144 pacid=23142018 polypeptide=Lus10020144 locus=Lus10020144.g ID=Lus10020144.BGIv1.0 annot-version=v1.0 MTTIDEVPSAKRWLPLEANPDVMNQFIWGLGLPENQAECYDVYGLDEELLAMVPQPVLAVIFLYPLTPQSEQERLQQEGVVKEPNEKVYFMKQTVGNACG TIGLLHAVGNIRSNINLLEGSFLDRLFKSTASMDPMQRARFLENDREMETAHSVAATGGETEASDDVNTHFICFVCVDGELYELDGRKAGPVLHGPSSPD TLLQDAGKMIKGMIQKNPESLNFNVMAISKKDGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10020144 [exp]	0	1
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	15.0	0.8432
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	22.7	0.8418
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	24.0	0.8344
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	27.4	0.8418
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	28.1	0.8377
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	37.6	0.8362
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	39.7	0.8362
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	46.6	0.8343
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	62.3	0.8225
					Lus10005096 [exp]	62.3	0.8235

Compare expression of checked genes

Lus10020144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.